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Items: 1 to 20 of 39

1.

Fitness response relation of a multitype age-structured population dynamics.

Sughiyama Y, Nakashima S, Kobayashi TJ.

Phys Rev E. 2019 Jan;99(1-1):012413. doi: 10.1103/PhysRevE.99.012413.

PMID:
30780204
2.

tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, Rando OJ, Kamakaka RT.

Mol Cell Biol. 2019 Apr 2;39(8). pii: e00432-18. doi: 10.1128/MCB.00432-18. Print 2019 Apr 15.

3.

Long-term hindlimb unloading causes a preferential reduction of medullary thymic epithelial cells expressing autoimmune regulator (Aire).

Horie K, Kudo T, Yoshinaga R, Akiyama N, Sasanuma H, Kobayashi TJ, Shimbo M, Jeon H, Miyao T, Miyauchi M, Shirakawa M, Shiba D, Yoshida N, Muratani M, Takahashi S, Akiyama T.

Biochem Biophys Res Commun. 2018 Jun 27;501(3):745-750. doi: 10.1016/j.bbrc.2018.05.060.

PMID:
29753741
4.

Stochastic and information-thermodynamic structures of population dynamics in a fluctuating environment.

Kobayashi TJ, Sughiyama Y.

Phys Rev E. 2017 Jul;96(1-1):012402. doi: 10.1103/PhysRevE.96.012402. Epub 2017 Jul 5.

PMID:
29347239
5.

Balancing specificity, sensitivity, and speed of ligand discrimination by zero-order ultraspecificity.

Kajita MK, Aihara K, Kobayashi TJ.

Phys Rev E. 2017 Jul;96(1-1):012405. doi: 10.1103/PhysRevE.96.012405. Epub 2017 Jul 14.

PMID:
29347185
6.

Quantification of Inter-Sample Differences in T-Cell Receptor Repertoires Using Sequence-Based Information.

Yokota R, Kaminaga Y, Kobayashi TJ.

Front Immunol. 2017 Nov 15;8:1500. doi: 10.3389/fimmu.2017.01500. eCollection 2017.

7.

Steady-state thermodynamics for population growth in fluctuating environments.

Sughiyama Y, Kobayashi TJ.

Phys Rev E. 2017 Jan;95(1-1):012131. doi: 10.1103/PhysRevE.95.012131. Epub 2017 Jan 19.

PMID:
28208406
8.

Systematic time-dependent visualization and quantitation of the neurogenic rate in brain organoids.

Kosodo Y, Suetsugu T, Kobayashi TJ, Matsuzaki F.

Biochem Biophys Res Commun. 2017 Jan 29;483(1):94-100. doi: 10.1016/j.bbrc.2016.12.187. Epub 2017 Jan 4.

PMID:
28063930
9.

Cortical Polarity of the RING Protein PAR-2 Is Maintained by Exchange Rate Kinetics at the Cortical-Cytoplasmic Boundary.

Arata Y, Hiroshima M, Pack CG, Ramanujam R, Motegi F, Nakazato K, Shindo Y, Wiseman PW, Sawa H, Kobayashi TJ, Brandão HB, Shibata T, Sako Y.

Cell Rep. 2016 Sep 27;17(1):316. doi: 10.1016/j.celrep.2016.09.044. Epub 2016 Sep 27. No abstract available.

10.

Discreteness-induced transitions in multibody reaction systems.

Saito Y, Sughiyama Y, Kaneko K, Kobayashi TJ.

Phys Rev E. 2016 Aug;94(2-1):022140. doi: 10.1103/PhysRevE.94.022140. Epub 2016 Aug 29.

PMID:
27627279
11.

Cortical Polarity of the RING Protein PAR-2 Is Maintained by Exchange Rate Kinetics at the Cortical-Cytoplasmic Boundary.

Arata Y, Hiroshima M, Pack CG, Ramanujam R, Motegi F, Nakazato K, Shindo Y, Wiseman PW, Sawa H, Kobayashi TJ, Brandão HB, Shibata T, Sako Y.

Cell Rep. 2016 Aug 23;16(8):2156-2168. doi: 10.1016/j.celrep.2016.07.047. Epub 2016 Aug 11. Erratum in: Cell Rep. 2016 Sep 27;17 (1):316.

12.

Fluctuation Relations of Fitness and Information in Population Dynamics.

Kobayashi TJ, Sughiyama Y.

Phys Rev Lett. 2015 Dec 4;115(23):238102. doi: 10.1103/PhysRevLett.115.238102. Epub 2015 Dec 2.

PMID:
26684143
13.

Positive and Negative Regulatory Mechanisms for Fine-Tuning Cellularity and Functions of Medullary Thymic Epithelial Cells.

Akiyama T, Tateishi R, Akiyama N, Yoshinaga R, Kobayashi TJ.

Front Immunol. 2015 Sep 8;6:461. doi: 10.3389/fimmu.2015.00461. eCollection 2015. Review.

14.

Pathwise thermodynamic structure in population dynamics.

Sughiyama Y, Kobayashi TJ, Tsumura K, Aihara K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):032120. Epub 2015 Mar 12.

PMID:
25871067
15.

Balancing acts of two HEAT subunits of condensin I support dynamic assembly of chromosome axes.

Kinoshita K, Kobayashi TJ, Hirano T.

Dev Cell. 2015 Apr 6;33(1):94-106. doi: 10.1016/j.devcel.2015.01.034.

16.

Experimental and theoretical bases for mechanisms of antigen discrimination by T cells.

Kajita MK, Yokota R, Aihara K, Kobayashi TJ.

Biophysics (Nagoya-shi). 2015 Mar 26;11:85-92. doi: 10.2142/biophysics.11.85. eCollection 2015. Review.

17.

Improved and robust detection of cell nuclei from four dimensional fluorescence images.

Bashar MK, Yamagata K, Kobayashi TJ.

PLoS One. 2014 Jul 14;9(7):e101891. doi: 10.1371/journal.pone.0101891. eCollection 2014.

18.

In vivo oriented modeling with consideration of intracellular crowding.

Hiroi N, Iba K, Tabira A, Okuhara T, Kubojima T, Hiraiwa T, Kobayashi TJ, Oka K, Funahashi A.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:2716-9. doi: 10.1109/EMBC.2013.6610101.

PMID:
24110288
19.

Information decoding in microscopic biological processes.

Kobayashi TJ.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:2704-7. doi: 10.1109/EMBC.2013.6610098.

PMID:
24110285
20.

Single cell visualization of yeast gene expression shows correlation of epigenetic switching between multiple heterochromatic regions through multiple generations.

Mano Y, Kobayashi TJ, Nakayama J, Uchida H, Oki M.

PLoS Biol. 2013 Jul;11(7):e1001601. doi: 10.1371/journal.pbio.1001601. Epub 2013 Jul 2.

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