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Items: 14

1.

Regulation of interferon stimulated gene expression levels at homeostasis.

Leviyang S, Strawn N, Griva I.

Cytokine. 2020 Feb;126:154870. doi: 10.1016/j.cyto.2019.154870. Epub 2019 Oct 16.

PMID:
31629105
2.
3.

High-Resolution Sequencing of Viral Populations during Early Simian Immunodeficiency Virus Infection Reveals Evolutionary Strategies for Rapid Escape from Emerging Env-Specific Antibody Responses.

Ita S, Hill AK, Lam EC, Dufort FJ, Yang X, Newman R, Leviyang S, Fofana IB, Johnson WE.

J Virol. 2018 Mar 14;92(7). pii: e01574-17. doi: 10.1128/JVI.01574-17. Print 2018 Apr 1.

4.

Correction: Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection.

Kijak GH, Sanders-Buell E, Chenine AL, Eller MA, Goonetilleke N, Thomas R, Leviyang S, Harbolick EA, Bose M, Pham P, Oropeza C, Poltavee K, O'Sullivan AM, Billings E, Merbah M, Costanzo MC, Warren JA, Slike B, Li H, Peachman KK, Fischer W, Gao F, Cicala C, Arthos J, Eller LA, O'Connell RJ, Sinei S, Maganga L, Kibuuka H, Nitayaphan S, Rao M, Marovich MA, Krebs SJ, Rolland M, Korber BT, Shaw GM, Michael NL, Robb ML, Tovanabutra S, Kim JH.

PLoS Pathog. 2017 Sep 14;13(9):e1006620. doi: 10.1371/journal.ppat.1006620. eCollection 2017 Sep.

5.

Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection.

Kijak GH, Sanders-Buell E, Chenine AL, Eller MA, Goonetilleke N, Thomas R, Leviyang S, Harbolick EA, Bose M, Pham P, Oropeza C, Poltavee K, O'Sullivan AM, Billings E, Merbah M, Costanzo MC, Warren JA, Slike B, Li H, Peachman KK, Fischer W, Gao F, Cicala C, Arthos J, Eller LA, O'Connell RJ, Sinei S, Maganga L, Kibuuka H, Nitayaphan S, Rao M, Marovich MA, Krebs SJ, Rolland M, Korber BT, Shaw GM, Michael NL, Robb ML, Tovanabutra S, Kim JH.

PLoS Pathog. 2017 Jul 31;13(7):e1006510. doi: 10.1371/journal.ppat.1006510. eCollection 2017 Jul. Erratum in: PLoS Pathog. 2017 Sep 14;13(9):e1006620.

6.

A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.

Leviyang S, Griva I, Ita S, Johnson WE.

Bioinformatics. 2017 Aug 15;33(16):2455-2463. doi: 10.1093/bioinformatics/btx187.

7.

Broad CTL Response in Early HIV Infection Drives Multiple Concurrent CTL Escapes.

Leviyang S, Ganusov VV.

PLoS Comput Biol. 2015 Oct 27;11(10):e1004492. doi: 10.1371/journal.pcbi.1004492. eCollection 2015 Oct.

8.

Constructing lower-bounds for CTL escape rates in early SIV infection.

Leviyang S.

J Theor Biol. 2014 Jul 7;352:82-91. doi: 10.1016/j.jtbi.2014.02.020. Epub 2014 Mar 3.

PMID:
24603063
9.

Computational inference methods for selective sweeps arising in acute HIV infection.

Leviyang S.

Genetics. 2013 Jul;194(3):737-52. doi: 10.1534/genetics.113.150862. Epub 2013 May 11.

10.

The coalescence of intrahost HIV lineages under symmetric CTL attack.

Leviyang S.

Bull Math Biol. 2012 Aug;74(8):1818-56. doi: 10.1007/s11538-012-9737-x. Epub 2012 May 30.

PMID:
22644341
11.

Analysis of a stochastic predator-prey model with applications to intrahost HIV genetic diversity.

Leviyang S.

J Math Biol. 2012 Dec;65(6-7):1285-336. doi: 10.1007/s00285-011-0497-2. Epub 2011 Dec 4.

PMID:
22139471
12.

Sampling HIV intrahost genealogies based on a model of acute stage CTL response.

Leviyang S.

Bull Math Biol. 2012 Mar;74(3):509-35. doi: 10.1007/s11538-011-9670-4. Epub 2011 Jul 8.

PMID:
21739335
13.

Properties of Weir and Cockerham's Fst estimators and associated bootstrap confidence intervals.

Leviyang S, Hamilton MB.

Theor Popul Biol. 2011 Feb-Mar;79(1-2):39-52. doi: 10.1016/j.tpb.2010.11.001. Epub 2010 Nov 20.

PMID:
21094655
14.

The distribution of Fst and other genetic statistics for a class of population structure models.

Leviyang S.

J Math Biol. 2011 Feb;62(2):203-89. doi: 10.1007/s00285-010-0333-0. Epub 2010 Feb 26.

PMID:
20186418

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