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Items: 1 to 20 of 76

1.

Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data.

Zhong X, Pla A, Rayner S.

Bioinformatics. 2019 Nov 4. pii: btz806. doi: 10.1093/bioinformatics/btz806. [Epub ahead of print]

PMID:
31681943
2.

Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies.

Zhong X, Heinicke F, Lie BA, Rayner S.

Noncoding RNA. 2019 Oct 28;5(4). pii: E49. doi: 10.3390/ncrna5040049.

3.

Systematic assessment of commercially available low-input miRNA library preparation kits.

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD.

RNA Biol. 2019 Sep 27:1-12. doi: 10.1080/15476286.2019.1667741. [Epub ahead of print]

PMID:
31559901
4.

3D cell culture models and organ-on-a-chip: Meet separation science and mass spectrometry.

Lin A, Sved Skottvoll F, Rayner S, Pedersen-Bjergaard S, Sullivan G, Krauss S, Ray Wilson S, Harrison S.

Electrophoresis. 2019 Sep 22. doi: 10.1002/elps.201900170. [Epub ahead of print] Review.

PMID:
31544246
5.

Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment.

Liang F, Lv K, Wang Y, Yuan Y, Lu L, Feng Q, Jing X, Wang H, Liu C, Rayner S, Ling S, Chen H, Wan Y, Zhou W, He L, Wu B, Qu L, Chen S, Xiong J, Li Y.

Front Physiol. 2019 Jul 31;10:932. doi: 10.3389/fphys.2019.00932. eCollection 2019.

6.

miRBaseMiner, a tool for investigating miRBase content.

Zhong X, Heinicke F, Rayner S.

RNA Biol. 2019 Nov;16(11):1534-1546. doi: 10.1080/15476286.2019.1637680. Epub 2019 Aug 12.

7.

The reemergence of human rabies and emergence of an Indian subcontinent lineage in Tibet, China.

Tao XY, Li ML, Wang Q, Baima C, Hong M, Li W, Wu YB, Li YR, Zhao YM, Rayner S, Zhu WY.

PLoS Negl Trop Dis. 2019 Jan 14;13(1):e0007036. doi: 10.1371/journal.pntd.0007036. eCollection 2019 Jan.

8.

miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts.

Pla A, Zhong X, Rayner S.

PLoS Comput Biol. 2018 Jul 13;14(7):e1006185. doi: 10.1371/journal.pcbi.1006185. eCollection 2018 Jul.

9.

Proteomic Analysis of Zika Virus Infected Primary Human Fetal Neural Progenitors Suggests a Role for Doublecortin in the Pathological Consequences of Infection in the Cortex.

Jiang X, Dong X, Li SH, Zhou YP, Rayner S, Xia HM, Gao GF, Yuan H, Tang YP, Luo MH.

Front Microbiol. 2018 Jun 5;9:1067. doi: 10.3389/fmicb.2018.01067. eCollection 2018.

10.

WDR5 Facilitates Human Cytomegalovirus Replication by Promoting Capsid Nuclear Egress.

Yang B, Liu XJ, Yao Y, Jiang X, Wang XZ, Yang H, Sun JY, Miao Y, Wang W, Huang ZL, Wang Y, Tang Q, Rayner S, Britt WJ, McVoy MA, Luo MH, Zhao F.

J Virol. 2018 Apr 13;92(9). pii: e00207-18. doi: 10.1128/JVI.00207-18. Print 2018 May 1.

11.

Infected T98G glioblastoma cells support human cytomegalovirus reactivation from latency.

Cheng S, Jiang X, Yang B, Wen L, Zhao F, Zeng WB, Liu XJ, Dong X, Sun JY, Ming YZ, Zhu H, Rayner S, Tang Q, Fortunato E, Luo MH.

Virology. 2017 Oct;510:205-215. doi: 10.1016/j.virol.2017.07.023. Epub 2017 Jul 24.

12.

Human cytomegalovirus IE1 downregulates Hes1 in neural progenitor cells as a potential E3 ubiquitin ligase.

Liu XJ, Yang B, Huang SN, Wu CC, Li XJ, Cheng S, Jiang X, Hu F, Ming YZ, Nevels M, Britt WJ, Rayner S, Tang Q, Zeng WB, Zhao F, Luo MH.

PLoS Pathog. 2017 Jul 27;13(7):e1006542. doi: 10.1371/journal.ppat.1006542. eCollection 2017 Jul.

13.

ORF7 of Varicella-Zoster Virus Is Required for Viral Cytoplasmic Envelopment in Differentiated Neuronal Cells.

Jiang HF, Wang W, Jiang X, Zeng WB, Shen ZZ, Song YG, Yang H, Liu XJ, Dong X, Zhou J, Sun JY, Yu FL, Guo L, Cheng T, Rayner S, Zhao F, Zhu H, Luo MH.

J Virol. 2017 May 26;91(12). pii: e00127-17. doi: 10.1128/JVI.00127-17. Print 2017 Jun 15.

14.

Identification of small RNAs in extracellular vesicles from the commensal yeast Malassezia sympodialis.

Rayner S, Bruhn S, Vallhov H, Andersson A, Billmyre RB, Scheynius A.

Sci Rep. 2017 Jan 4;7:39742. doi: 10.1038/srep39742.

15.

Correction for Pan et al., Later Passages of Neural Progenitor Cells from Neonatal Brain Are More Permissive for Human Cytomegalovirus Infection.

Pan X, Li XJ, Liu XJ, Yuan H, Li JF, Duan YL, Ye HQ, Fu YR, Qiao GH, Wu CC, Yang B, Tian XH, Hu KH, Miao LF, Chen XL, Zheng J, Rayner S, Schwartz PH, Britt WJ, Xu J, Luo MH.

J Virol. 2016 Oct 28;90(22):10431-10433. doi: 10.1128/JVI.01780-16. Print 2016 Nov 15. No abstract available.

16.

Rabies Cases in the West of China Have Two Distinct Origins.

Tao XY, Guo ZY, Li H, Jiao WT, Shen XX, Zhu WY, Rayner S, Tang Q.

PLoS Negl Trop Dis. 2015 Oct 20;9(10):e0004140. doi: 10.1371/journal.pntd.0004140. eCollection 2015.

17.

Identification and BAC construction of Han, the first characterized HCMV clinical strain in China.

Zhao F, Shen ZZ, Liu ZY, Zeng WB, Cheng S, Ma YP, Rayner S, Yang B, Qiao GH, Jiang HF, Gao S, Zhu H, Xu FQ, Ruan Q, Luo MH.

J Med Virol. 2016 May;88(5):859-70. doi: 10.1002/jmv.24396. Epub 2015 Oct 12.

PMID:
26426373
18.

Resistant mutations and quasispecies complexity of hepatitis B virus during telbivudine treatment.

Yin F, Wu Z, Fang W, Wu C, Rayner S, Han M, Deng F, Du R, Liu J, Wang M, Wang H, Ning Q, Hu Z.

J Gen Virol. 2015 Nov;96(11):3302-12. doi: 10.1099/jgv.0.000285. Epub 2015 Sep 16.

PMID:
26382925
19.

Investigation of the genotype III to genotype I shift in Japanese encephalitis virus and the impact on human cases.

Han N, Adams J, Fang W, Liu SQ, Rayner S.

Virol Sin. 2015 Aug;30(4):277-89. doi: 10.1007/s12250-015-3621-4. Epub 2015 Aug 18.

PMID:
26311492
20.

How Ebola has been evolving in West Africa.

Liu SQ, Rayner S, Zhang B.

Trends Microbiol. 2015 Jul;23(7):387-8. doi: 10.1016/j.tim.2015.05.003. Epub 2015 May 15.

PMID:
25986056

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