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Insight derived from molecular dynamics simulation into cold-adaptation mechanism of trypsins.

Yang LQ, Yin YR, Shen JX, Li Y, Liu SQ, Sang P.

J Biomol Struct Dyn. 2019 Jul 1:1-9. doi: 10.1080/07391102.2019.1635529. [Epub ahead of print]


Effects of CD4 Binding on Conformational Dynamics, Molecular Motions, and Thermodynamics of HIV-1 gp120.

Li Y, Deng L, Yang LQ, Sang P, Liu SQ.

Int J Mol Sci. 2019 Jan 10;20(2). pii: E260. doi: 10.3390/ijms20020260.


Suppression of MIF-induced neuronal apoptosis may underlie the therapeutic effects of effective components of Fufang Danshen in the treatment of Alzheimer's disease.

Liang CJ, Li JH, Zhang Z, Zhang JY, Liu SQ, Yang J.

Acta Pharmacol Sin. 2018 Sep;39(9):1421-1438. doi: 10.1038/aps.2017.210. Epub 2018 May 17.


Insight derived from molecular dynamics simulation into dynamics and molecular motions of cuticle-degrading serine protease Ver112.

Yang LQ, Chen GY, Li Y, Zhang RP, Liu SQ, Sang P.

J Biomol Struct Dyn. 2019 May;37(8):2004-2016. doi: 10.1080/07391102.2018.1471418. Epub 2018 May 28.


Comparison of periarticular anesthesia with liposomal bupivacaine with femoral nerve block for pain control after total knee arthroplasty: A PRISMA-compliant meta-analysis.

Liu SQ, Chen X, Yu CC, Weng CW, Wu YQ, Xiong JC, Xu SH.

Medicine (Baltimore). 2017 Mar;96(13):e6462. doi: 10.1097/MD.0000000000006462.


Effect of the R119G mutation on human P5CR structure and its interactions with NAD: Insights derived from molecular dynamics simulation and free energy analysis.

Sang P, Xie YH, Li LH, Ye YJ, Hu W, Wang J, Wan W, Li R, Li LJ, Ma LL, Li Z, Liu SQ, Meng ZH.

Comput Biol Chem. 2017 Apr;67:141-149. doi: 10.1016/j.compbiolchem.2016.12.015. Epub 2017 Jan 5.


Comparative thermal unfolding study of psychrophilic and mesophilic subtilisin-like serine proteases by molecular dynamics simulations.

Du X, Sang P, Xia YL, Li Y, Liang J, Ai SM, Ji XL, Fu YX, Liu SQ.

J Biomol Struct Dyn. 2017 May;35(7):1500-1517. doi: 10.1080/07391102.2016.1188155. Epub 2016 Aug 2.


Effect of the Solvent Temperatures on Dynamics of Serine Protease Proteinase K.

Sang P, Yang Q, Du X, Yang N, Yang LQ, Ji XL, Fu YX, Meng ZH, Liu SQ.

Int J Mol Sci. 2016 Feb 19;17(2):254. doi: 10.3390/ijms17020254.


Insights into Protein-Ligand Interactions: Mechanisms, Models, and Methods.

Du X, Li Y, Xia YL, Ai SM, Liang J, Sang P, Ji XL, Liu SQ.

Int J Mol Sci. 2016 Jan 26;17(2). pii: E144. doi: 10.3390/ijms17020144. Review.


Efficient Estimation of Mutation Rates during Individual Development by Minimization of Chi-Square.

Ai SM, Gao JJ, Liu SQ, Fu YX.

PLoS One. 2015 Aug 12;10(8):e0135398. doi: 10.1371/journal.pone.0135398. eCollection 2015.


Bacteria can mobilize nematode-trapping fungi to kill nematodes.

Wang X, Li GH, Zou CG, Ji XL, Liu T, Zhao PJ, Liang LM, Xu JP, An ZQ, Zheng X, Qin YK, Tian MQ, Xu YY, Ma YC, Yu ZF, Huang XW, Liu SQ, Niu XM, Yang JK, Huang Y, Zhang KQ.

Nat Commun. 2014 Dec 16;5:5776. doi: 10.1038/ncomms6776.


Insight derived from molecular dynamics simulations into molecular motions, thermodynamics and kinetics of HIV-1 gp120.

Sang P, Yang LQ, Ji XL, Fu YX, Liu SQ.

PLoS One. 2014 Aug 8;9(8):e104714. doi: 10.1371/journal.pone.0104714. eCollection 2014.


Pattern of mutation rates in the germline of Drosophila melanogaster males from a large-scale mutation screening experiment.

Gao JJ, Pan XR, Hu J, Ma L, Wu JM, Shao YL, Ai SM, Liu SQ, Barton SA, Woodruff RC, Zhang YP, Fu YX.

G3 (Bethesda). 2014 Jun 11;4(8):1503-14. doi: 10.1534/g3.114.011056.


Protein dynamics and motions in relation to their functions: several case studies and the underlying mechanisms.

Yang LQ, Sang P, Tao Y, Fu YX, Zhang KQ, Xie YH, Liu SQ.

J Biomol Struct Dyn. 2014;32(3):372-93. doi: 10.1080/07391102.2013.770372. Epub 2013 Mar 25.


The free energy landscape of protein folding and dynamics: a global view.

Yang LQ, Ji XL, Liu SQ.

J Biomol Struct Dyn. 2013;31(9):982-92. doi: 10.1080/07391102.2012.748536. Epub 2013 Jan 9. No abstract available.


Is stoichiometry-driven protein folding getting out of thermodynamic control?

Ji XL, Liu SQ.

J Biomol Struct Dyn. 2011 Feb;28(4):621-3; discussion 669-674. No abstract available.


Recombination facilitates neofunctionalization of duplicate genes via originalization.

Xue C, Huang R, Liu SQ, Fu YX.

BMC Genet. 2010 Jun 9;11:46. doi: 10.1186/1471-2156-11-46.


The effect of calciums on molecular motions of proteinase K.

Liu SQ, Tao Y, Meng ZH, Fu YX, Zhang KQ.

J Mol Model. 2011 Feb;17(2):289-300. doi: 10.1007/s00894-010-0724-6. Epub 2010 May 6.


Insights derived from molecular dynamics simulation into the molecular motions of serine protease proteinase K.

Liu SQ, Meng ZH, Fu YX, Zhang KQ.

J Mol Model. 2010 Jan;16(1):17-28. doi: 10.1007/s00894-009-0518-x. Epub 2009 May 23.


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