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Items: 1 to 20 of 27

1.

Genome-wide analysis of DNA methylation profile identifies differentially methylated loci associated with human intervertebral disc degeneration.

Ikuno A, Akeda K, Takebayashi SI, Shimaoka M, Okumura K, Sudo A.

PLoS One. 2019 Sep 12;14(9):e0222188. doi: 10.1371/journal.pone.0222188. eCollection 2019.

2.

Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization.

Miura H, Takahashi S, Poonperm R, Tanigawa A, Takebayashi SI, Hiratani I.

Nat Genet. 2019 Sep;51(9):1356-1368. doi: 10.1038/s41588-019-0474-z. Epub 2019 Aug 12.

PMID:
31406346
3.

Genome-wide stability of the DNA replication program in single mammalian cells.

Takahashi S, Miura H, Shibata T, Nagao K, Okumura K, Ogata M, Obuse C, Takebayashi SI, Hiratani I.

Nat Genet. 2019 Mar;51(3):529-540. doi: 10.1038/s41588-019-0347-5. Epub 2019 Feb 25.

PMID:
30804559
4.

Mapping mammalian replication domains using the ion torrent semiconductor sequencing platform.

Takebayashi SI, Ogata S, Ogata M, Okumura K.

Biosci Biotechnol Biochem. 2018 Dec;82(12):2098-2100. doi: 10.1080/09168451.2018.1515617. Epub 2018 Sep 10.

PMID:
30198402
5.

Correlation between histone acetylation and expression of Notch1 in human lung carcinoma and its possible role in combined small-cell lung carcinoma.

Hassan WA, Takebayashi SI, Abdalla MOA, Fujino K, Kudoh S, Motooka Y, Sato Y, Naito Y, Higaki K, Wakimoto J, Okada S, Nakao M, Ishikawa Y, Ito T.

Lab Invest. 2017 Aug;97(8):913-921. doi: 10.1038/labinvest.2017.36. Epub 2017 Apr 17.

6.

Anatomy of Mammalian Replication Domains.

Takebayashi SI, Ogata M, Okumura K.

Genes (Basel). 2017 Mar 28;8(4). pii: E110. doi: 10.3390/genes8040110. Review.

7.

The SETD8/PR-Set7 Methyltransferase Functions as a Barrier to Prevent Senescence-Associated Metabolic Remodeling.

Tanaka H, Takebayashi SI, Sakamoto A, Igata T, Nakatsu Y, Saitoh N, Hino S, Nakao M.

Cell Rep. 2017 Feb 28;18(9):2148-2161. doi: 10.1016/j.celrep.2017.02.021.

8.

Direct visualization of replication dynamics in early zebrafish embryos.

Kuriya K, Higashiyama E, Avşar-Ban E, Okochi N, Hattori K, Ogata S, Takebayashi S, Ogata M, Tamaru Y, Okumura K.

Biosci Biotechnol Biochem. 2016 May;80(5):945-8. doi: 10.1080/09168451.2016.1141039. Epub 2016 Feb 29.

PMID:
26923175
9.

Direct Visualization of DNA Replication Dynamics in Zebrafish Cells.

Kuriya K, Higashiyama E, Avşar-Ban E, Tamaru Y, Ogata S, Takebayashi S, Ogata M, Okumura K.

Zebrafish. 2015 Dec;12(6):432-9. doi: 10.1089/zeb.2015.1151. Epub 2015 Nov 5.

PMID:
26540100
10.

Retinoblastoma protein promotes oxidative phosphorylation through upregulation of glycolytic genes in oncogene-induced senescent cells.

Takebayashi S, Tanaka H, Hino S, Nakatsu Y, Igata T, Sakamoto A, Narita M, Nakao M.

Aging Cell. 2015 Aug;14(4):689-97. doi: 10.1111/acel.12351. Epub 2015 May 25.

11.

Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains.

Takebayashi S, Lei I, Ryba T, Sasaki T, Dileep V, Battaglia D, Gao X, Fang P, Fan Y, Esteban MA, Tang J, Crabtree GR, Wang Z, Gilbert DM.

Epigenetics Chromatin. 2013 Dec 13;6(1):42. doi: 10.1186/1756-8935-6-42.

12.

Low-cost fabrication of centimetre-scale periodic arrays of single plasmid DNA molecules.

Kirkland B, Wang Z, Zhang P, Takebayashi S, Lenhert S, Gilbert DM, Guan J.

Lab Chip. 2013 Sep 7;13(17):3367-72. doi: 10.1039/c3lc50562f. Epub 2013 Jul 4.

13.

Development of a single-cell array for large-scale DNA fluorescence in situ hybridization.

Liu Y, Kirkland B, Shirley J, Wang Z, Zhang P, Stembridge J, Wong W, Takebayashi S, Gilbert DM, Lenhert S, Guan J.

Lab Chip. 2013 Apr 7;13(7):1316-24. doi: 10.1039/c2lc40364a.

14.

Developmental control of replication timing defines a new breed of chromosomal domains with a novel mechanism of chromatin unfolding.

Takebayashi S, Ryba T, Gilbert DM.

Nucleus. 2012 Nov-Dec;3(6):500-7. doi: 10.4161/nucl.22318. Epub 2012 Sep 28.

15.

Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding.

Takebayashi S, Dileep V, Ryba T, Dennis JH, Gilbert DM.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12574-9. doi: 10.1073/pnas.1207185109. Epub 2012 Jul 17.

16.

Microfluidic extraction and stretching of chromosomal DNA from single cell nuclei for DNA fluorescence in situ hybridization.

Wang X, Takebayashi S, Bernardin E, Gilbert DM, Chella R, Guan J.

Biomed Microdevices. 2012 Jun;14(3):443-51. doi: 10.1007/s10544-011-9621-8.

17.

FISH Finder: a high-throughput tool for analyzing FISH images.

Shirley JW, Ty S, Takebayashi S, Liu X, Gilbert DM.

Bioinformatics. 2011 Apr 1;27(7):933-8. doi: 10.1093/bioinformatics/btr053. Epub 2011 Feb 9.

18.

Replication timing and transcriptional control: beyond cause and effect--part II.

Hiratani I, Takebayashi S, Lu J, Gilbert DM.

Curr Opin Genet Dev. 2009 Apr;19(2):142-9. doi: 10.1016/j.gde.2009.02.002. Epub 2009 Apr 1. Review.

19.

PARP-1 ensures regulation of replication fork progression by homologous recombination on damaged DNA.

Sugimura K, Takebayashi S, Taguchi H, Takeda S, Okumura K.

J Cell Biol. 2008 Dec 29;183(7):1203-12. doi: 10.1083/jcb.200806068. Epub 2008 Dec 22.

20.

The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.

Sharif J, Muto M, Takebayashi S, Suetake I, Iwamatsu A, Endo TA, Shinga J, Mizutani-Koseki Y, Toyoda T, Okamura K, Tajima S, Mitsuya K, Okano M, Koseki H.

Nature. 2007 Dec 6;450(7171):908-12. Epub 2007 Nov 11.

PMID:
17994007

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