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Items: 12

1.

A Perspective and Framework for Developing Sample Type Specific Databases for LC/MS-Based Clinical Metabolomics.

Reisdorph NA, Walmsley S, Reisdorph R.

Metabolites. 2019 Dec 21;10(1). pii: E8. doi: 10.3390/metabo10010008.

2.

Methods and Challenges for Computational Data Analysis for DNA Adductomics.

Walmsley SJ, Guo J, Wang J, Villalta PW, Turesky RJ.

Chem Res Toxicol. 2019 Nov 18;32(11):2156-2168. doi: 10.1021/acs.chemrestox.9b00196. Epub 2019 Nov 6.

PMID:
31549505
3.

Truncated rank correlation (TRC) as a robust measure of test-retest reliability in mass spectrometry data.

Lim J, Yu D, Kuo HC, Choi H, Walmsley S.

Stat Appl Genet Mol Biol. 2019 May 30;18(4). pii: /j/sagmb.2019.18.issue-4/sagmb-2018-0056/sagmb-2018-0056.xml. doi: 10.1515/sagmb-2018-0056.

PMID:
31145698
4.

A prototypic small molecule database for bronchoalveolar lavage-based metabolomics.

Walmsley S, Cruickshank-Quinn C, Quinn K, Zhang X, Petrache I, Bowler RP, Reisdorph R, Reisdorph N.

Sci Data. 2018 Apr 17;5:180060. doi: 10.1038/sdata.2018.60.

5.

Performance of a High-Pressure Liquid Chromatography-Ion Mobility-Mass Spectrometry System for Metabolic Profiling.

Zhang X, Kew K, Reisdorph R, Sartain M, Powell R, Armstrong M, Quinn K, Cruickshank-Quinn C, Walmsley S, Bokatzian S, Darland E, Rain M, Imatani K, Reisdorph N.

Anal Chem. 2017 Jun 20;89(12):6384-6391. doi: 10.1021/acs.analchem.6b04628. Epub 2017 Jun 2.

PMID:
28528542
6.

Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow.

Chen G, Walmsley S, Cheung GCM, Chen L, Cheng CY, Beuerman RW, Wong TY, Zhou L, Choi H.

Anal Chem. 2017 May 2;89(9):4897-4906. doi: 10.1021/acs.analchem.6b05006. Epub 2017 Apr 18.

7.

Comprehensive analysis of protein digestion using six trypsins reveals the origin of trypsin as a significant source of variability in proteomics.

Walmsley SJ, Rudnick PA, Liang Y, Dong Q, Stein SE, Nesvizhskii AI.

J Proteome Res. 2013 Dec 6;12(12):5666-80. doi: 10.1021/pr400611h. Epub 2013 Nov 14.

8.

LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach.

Fermin D, Walmsley SJ, Gingras AC, Choi H, Nesvizhskii AI.

Mol Cell Proteomics. 2013 Nov;12(11):3409-19. doi: 10.1074/mcp.M113.028928. Epub 2013 Aug 5.

9.

Proteomic profiling of the effect of metabolic acidosis on the apical membrane of the proximal convoluted tubule.

Walmsley SJ, Freund DM, Curthoys NP.

Am J Physiol Renal Physiol. 2012 Jun 1;302(11):F1465-77. doi: 10.1152/ajprenal.00390.2011. Epub 2012 Feb 22.

10.

Proteomic analysis of brush-border membrane vesicles isolated from purified proximal convoluted tubules.

Walmsley SJ, Broeckling C, Hess A, Prenni J, Curthoys NP.

Am J Physiol Renal Physiol. 2010 Jun;298(6):F1323-31. doi: 10.1152/ajprenal.00711.2009. Epub 2010 Mar 10.

11.

Identification of serum biomarkers for canine B-cell lymphoma by use of surface-enhanced laser desorption-ionization time-of-flight mass spectrometry.

Gaines PJ, Powell TD, Walmsley SJ, Estredge KL, Wisnewski N, Stinchcomb DT, Withrow SJ, Lana SE.

Am J Vet Res. 2007 Apr;68(4):405-10.

PMID:
17397297
12.

Cloning and characterization of five cDNAs encoding peritrophin-A domains from the cat flea, Ctenocephalides felis.

Gaines PJ, Walmsley SJ, Wisnewski N.

Insect Biochem Mol Biol. 2003 Nov;33(11):1061-73.

PMID:
14563358

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