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Items: 18

1.

Metabolomics Provide Sensitive Insights into the Impacts of Low Level Environmental Contamination on Fish Health-A Pilot Study.

Long SM, Tull DL, De Souza DP, Kouremenos KA, Dayalan S, McConville MJ, Hassell KL, Pettigrove VJ, Gagnon MM.

Metabolites. 2020 Jan 6;10(1). pii: E24. doi: 10.3390/metabo10010024.

2.

Metabolite Changes in an Estuarine Annelid Following Sublethal Exposure to a Mixture of Zinc and Boscalid.

Sinclair GM, O'Brien AL, Keough M, de Souza DP, Dayalan S, Kanojia K, Kouremenos K, Tull DL, Coleman RA, Jones OAH, Long SM.

Metabolites. 2019 Oct 15;9(10). pii: E229. doi: 10.3390/metabo9100229.

3.

Coxiella burnetii utilizes both glutamate and glucose during infection with glucose uptake mediated by multiple transporters.

Kuba M, Neha N, De Souza DP, Dayalan S, Newson JPM, Tull D, McConville MJ, Sansom FM, Newton HJ.

Biochem J. 2019 Oct 15;476(19):2851-2867. doi: 10.1042/BCJ20190504.

4.

Using metabolomics to assess the sub-lethal effects of zinc and boscalid on an estuarine polychaete worm over time.

Sinclair GM, O'Brien AL, Keough M, De Souza DP, Dayalan S, Kanojia K, Kouremenos K, Tull DL, Coleman RA, Jones OAH, Long SM.

Metabolomics. 2019 Jul 31;15(8):108. doi: 10.1007/s11306-019-1570-x.

PMID:
31367897
5.

A combined metabolomic and bioinformatic approach to investigate the function of transport proteins of the important pathogen Mycoplasma bovis.

Masukagami Y, Nijagal B, Mahdizadeh S, Tseng CW, Dayalan S, Tivendale KA, Markham PF, Browning GF, Sansom FM.

Vet Microbiol. 2019 Jul;234:8-16. doi: 10.1016/j.vetmic.2019.05.008. Epub 2019 May 9.

PMID:
31213276
6.

Review of recent developments in GC-MS approaches to metabolomics-based research.

Beale DJ, Pinu FR, Kouremenos KA, Poojary MM, Narayana VK, Boughton BA, Kanojia K, Dayalan S, Jones OAH, Dias DA.

Metabolomics. 2018 Nov 17;14(11):152. doi: 10.1007/s11306-018-1449-2. Review.

PMID:
30830421
7.

mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.

Hoffmann N, Rein J, Sachsenberg T, Hartler J, Haug K, Mayer G, Alka O, Dayalan S, Pearce JTM, Rocca-Serra P, Qi D, Eisenacher M, Perez-Riverol Y, Vizcaíno JA, Salek RM, Neumann S, Jones AR.

Anal Chem. 2019 Mar 5;91(5):3302-3310. doi: 10.1021/acs.analchem.8b04310. Epub 2019 Feb 13.

8.

Metabolite profiling of Mycoplasma gallisepticum mutants, combined with bioinformatic analysis, can reveal the likely functions of virulence-associated genes.

Masukagami Y, Nijagal B, Tseng CW, Dayalan S, Tivendale KA, Markham PF, Browning GF, Sansom FM.

Vet Microbiol. 2018 Sep;223:160-167. doi: 10.1016/j.vetmic.2018.08.001. Epub 2018 Aug 2.

PMID:
30173742
9.

Best practice data life cycle approaches for the life sciences.

Griffin PC, Khadake J, LeMay KS, Lewis SE, Orchard S, Pask A, Pope B, Roessner U, Russell K, Seemann T, Treloar A, Tyagi S, Christiansen JH, Dayalan S, Gladman S, Hangartner SB, Hayden HL, Ho WWH, Keeble-Gagnère G, Korhonen PK, Neish P, Prestes PR, Richardson MF, Watson-Haigh NS, Wyres KL, Young ND, Schneider MV.

Version 2. F1000Res. 2017 Aug 31 [revised 2018 Jan 1];6:1618. doi: 10.12688/f1000research.12344.2. eCollection 2017.

10.

Talaromyces marneffei simA Encodes a Fungal Cytochrome P450 Essential for Survival in Macrophages.

Boyce KJ, De Souza DP, Dayalan S, Pasricha S, Tull D, McConville MJ, Andrianopoulos A.

mSphere. 2018 Mar 21;3(2). pii: e00056-18. doi: 10.1128/mSphere.00056-18. eCollection 2018 Mar-Apr.

11.

Synergy between the KEAP1/NRF2 and PI3K Pathways Drives Non-Small-Cell Lung Cancer with an Altered Immune Microenvironment.

Best SA, De Souza DP, Kersbergen A, Policheni AN, Dayalan S, Tull D, Rathi V, Gray DH, Ritchie ME, McConville MJ, Sutherland KD.

Cell Metab. 2018 Apr 3;27(4):935-943.e4. doi: 10.1016/j.cmet.2018.02.006. Epub 2018 Mar 8.

12.

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

Schneider MV, Griffin PC, Tyagi S, Flannery M, Dayalan S, Gladman S, Watson-Haigh N, Bayer PE, Charleston M, Cooke I, Cook R, Edwards RJ, Edwards D, Gorse D, McConville M, Powell D, Wilkins MR, Lonie A.

Brief Bioinform. 2019 Mar 22;20(2):384-389. doi: 10.1093/bib/bbx071.

13.

MASTR-MS: a web-based collaborative laboratory information management system (LIMS) for metabolomics.

Hunter A, Dayalan S, De Souza D, Power B, Lorrimar R, Szabo T, Nguyen T, O'Callaghan S, Hack J, Pyke J, Nahid A, Barrero R, Roessner U, Likic V, Tull D, Bacic A, McConville M, Bellgard M.

Metabolomics. 2017;13(2):14. doi: 10.1007/s11306-016-1142-2. Epub 2016 Dec 27.

14.

A Review of Analytical Techniques and Their Application in Disease Diagnosis in Breathomics and Salivaomics Research.

Beale DJ, Jones OA, Karpe AV, Dayalan S, Oh DY, Kouremenos KA, Ahmed W, Palombo EA.

Int J Mol Sci. 2016 Dec 23;18(1). pii: E24. doi: 10.3390/ijms18010024. Review.

15.

Lipidomic Profiling of Adipose Tissue Reveals an Inflammatory Signature in Cancer-Related and Primary Lymphedema.

Sedger LM, Tull DL, McConville MJ, De Souza DP, Rupasinghe TW, Williams SJ, Dayalan S, Lanzer D, Mackie H, Lam TC, Boyages J.

PLoS One. 2016 May 16;11(5):e0154650. doi: 10.1371/journal.pone.0154650. eCollection 2016.

16.

Data standards can boost metabolomics research, and if there is a will, there is a way.

Rocca-Serra P, Salek RM, Arita M, Correa E, Dayalan S, Gonzalez-Beltran A, Ebbels T, Goodacre R, Hastings J, Haug K, Koulman A, Nikolski M, Oresic M, Sansone SA, Schober D, Smith J, Steinbeck C, Viant MR, Neumann S.

Metabolomics. 2016;12:14. doi: 10.1007/s11306-015-0879-3. Epub 2015 Nov 17. Review.

17.

A multi-platform metabolomics approach demonstrates changes in energy metabolism and the transsulfuration pathway in Chironomus tepperi following exposure to zinc.

Long SM, Tull DL, Jeppe KJ, De Souza DP, Dayalan S, Pettigrove VJ, McConville MJ, Hoffmann AA.

Aquat Toxicol. 2015 May;162:54-65. doi: 10.1016/j.aquatox.2015.03.009. Epub 2015 Mar 10.

PMID:
25781392
18.

Dihedral angle and secondary structure database of short amino acid fragments.

Dayalan S, Gooneratne ND, Bevinakoppa S, Schroder H.

Bioinformation. 2006 Jan 1;1(3):78-80.

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