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Items: 1 to 20 of 71

1.

Novel algorithms for LDD motif search.

Xiao P, Schiller M, Rajasekaran S.

BMC Genomics. 2019 Jun 6;20(Suppl 5):424. doi: 10.1186/s12864-019-5701-6.

2.

RETRACTED: LFQC: a lossless compression algorithm for FASTQ files.

Pathak S, Rajasekaran S.

Bioinformatics. 2019 May 1;35(9):e1-e7. doi: 10.1093/bioinformatics/btu701.

PMID:
31051040
3.

MSC: a metagenomic sequence classification algorithm.

Saha S, Johnson J, Pal S, Weinstock GM, Rajasekaran S.

Bioinformatics. 2019 Sep 1;35(17):2932-2940. doi: 10.1093/bioinformatics/bty1071.

PMID:
30649204
4.

Efficient Algorithms for Finding the Closest l-mers in Biological Data.

Cai X, Mamun AA, Rajasekaran S.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jun 4. doi: 10.1109/TCBB.2018.2843364. [Epub ahead of print]

PMID:
29993557
5.

Minimotif Miner 4: a million peptide minimotifs and counting.

Lyon KF, Cai X, Young RJ, Mamun AA, Rajasekaran S, Schiller MR.

Nucleic Acids Res. 2018 Jan 4;46(D1):D465-D470. doi: 10.1093/nar/gkx1085.

6.

On pattern matching with k mismatches and few don't cares.

Nicolae M, Rajasekaran S.

Inf Process Lett. 2017 Feb;118:78-82. doi: 10.1016/j.ipl.2016.10.003. Epub 2016 Oct 27.

7.

Efficient sequential and parallel algorithms for finding edit distance based motifs.

Pal S, Xiao P, Rajasekaran S.

BMC Genomics. 2016 Aug 18;17 Suppl 4:465. doi: 10.1186/s12864-016-2789-9.

8.

NRGC: a novel referential genome compression algorithm.

Saha S, Rajasekaran S.

Bioinformatics. 2016 Nov 15;32(22):3405-3412. Epub 2016 Aug 2.

9.

KCMBT: a k-mer Counter based on Multiple Burst Trees.

Mamun AA, Pal S, Rajasekaran S.

Bioinformatics. 2016 Sep 15;32(18):2783-90. doi: 10.1093/bioinformatics/btw345. Epub 2016 Jun 9.

10.

Efficient Record Linkage Algorithms Using Complete Linkage Clustering.

Mamun AA, Aseltine R, Rajasekaran S.

PLoS One. 2016 Apr 28;11(4):e0154446. doi: 10.1371/journal.pone.0154446. eCollection 2016.

11.

The Functional Human C-Terminome.

Sharma S, Toledo O, Hedden M, Lyon KF, Brooks SB, David RP, Limtong J, Newsome JM, Novakovic N, Rajasekaran S, Thapar V, Williams SR, Schiller MR.

PLoS One. 2016 Apr 6;11(4):e0152731. doi: 10.1371/journal.pone.0152731. eCollection 2016.

12.

Authors' response to 'Comment on: ERGC: An efficient Referential Genome Compression Algorithm'.

Saha S, Rajasekaran S.

Bioinformatics. 2016 Apr 1;32(7):1118-9. doi: 10.1093/bioinformatics/btv720. Epub 2015 Dec 31.

PMID:
26722114
13.

EC: an efficient error correction algorithm for short reads.

Saha S, Rajasekaran S.

BMC Bioinformatics. 2015;16 Suppl 17:S2. doi: 10.1186/1471-2105-16-S17-S2. Epub 2015 Dec 7.

14.

ERGC: an efficient referential genome compression algorithm.

Saha S, Rajasekaran S.

Bioinformatics. 2015 Nov 1;31(21):3468-75. doi: 10.1093/bioinformatics/btv399. Epub 2015 Jul 2.

15.

LFQC: a lossless compression algorithm for FASTQ files.

Nicolae M, Pathak S, Rajasekaran S.

Bioinformatics. 2015 Oct 15;31(20):3276-81. doi: 10.1093/bioinformatics/btv384. Epub 2015 Jun 20.

16.

Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.

Lyon KF, Strong CL, Schooler SG, Young RJ, Roy N, Ozar B, Bachmeier M 2nd, Rajasekaran S, Schiller MR.

Nucleic Acids Res. 2015 Jul 27;43(13):6399-412. doi: 10.1093/nar/gkv580. Epub 2015 Jun 11.

17.

RLT-S: A Web System for Record Linkage.

Mamun AA, Aseltine R, Rajasekaran S.

PLoS One. 2015 May 5;10(5):e0124449. doi: 10.1371/journal.pone.0124449. eCollection 2015.

18.

A molecular structure matching approach to efficient identification of endogenous mammalian biochemical structures.

Hamdalla MA, Ammar RA, Rajasekaran S.

BMC Bioinformatics. 2015;16 Suppl 5:S11. doi: 10.1186/1471-2105-16-S5-S11. Epub 2015 Mar 18.

19.

Corrigendum: qPMS9: an efficient algorithm for quorum planted motif search.

Nicolae M, Rajasekaran S.

Sci Rep. 2015 Mar 27;5:9544. doi: 10.1038/srep09544. No abstract available.

20.

This special issue includes a selection of papers presented at the 2nd IEEE International Conference. Introduction.

Mandoiu I, Pop M, Rajasekaran S, Spouge JL.

Int J Bioinform Res Appl. 2014;10(4-5):341-4. No abstract available.

PMID:
25715438

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