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Items: 11

1.

Molecular Dynamics Simulations Suggest a Non-Doublet Decoding Model of -1 Frameshifting by tRNASer3.

Caulfield T, Coban M, Tek A, Flores SC.

Biomolecules. 2019 Nov 18;9(11). pii: E745. doi: 10.3390/biom9110745.

2.

Insights from engineering the Affibody-Fc interaction with a computational-experimental method.

Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MR, Löfblom J, Virtanen A, Danielson UH, Flores SC.

Protein Eng Des Sel. 2017 Sep 1;30(9):593-601. doi: 10.1093/protein/gzx023.

PMID:
28472513
3.

Modeling and fitting protein-protein complexes to predict change of binding energy.

Dourado DF, Flores SC.

Sci Rep. 2016 May 13;6:25406. doi: 10.1038/srep25406.

4.

MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory.

Tek A, Korostelev AA, Flores SC.

Nucleic Acids Res. 2016 Jan 8;44(1):95-105. doi: 10.1093/nar/gkv1457. Epub 2015 Dec 15.

5.

A multiscale approach to predicting affinity changes in protein-protein interfaces.

Dourado DF, Flores SC.

Proteins. 2014 Oct;82(10):2681-90. doi: 10.1002/prot.24634. Epub 2014 Jul 5.

PMID:
24975440
6.

Fast fitting to low resolution density maps: elucidating large-scale motions of the ribosome.

Flores SC.

Nucleic Acids Res. 2014 Jan;42(2):e9. doi: 10.1093/nar/gkt906. Epub 2013 Sep 29.

7.

Insights into diseases of human telomerase from dynamical modeling.

Flores SC, Zemora G, Waldsich C.

Pac Symp Biocomput. 2013:200-11.

8.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E.

RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23.

9.

Fast flexible modeling of RNA structure using internal coordinates.

Flores SC, Sherman MA, Bruns CM, Eastman P, Altman RB.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Sep-Oct;8(5):1247-57. doi: 10.1109/TCBB.2010.104.

10.

Structural insights into pre-translocation ribosome motions.

Flores SC, Altman R.

Pac Symp Biocomput. 2011:205-11.

11.

Turning limited experimental information into 3D models of RNA.

Flores SC, Altman RB.

RNA. 2010 Sep;16(9):1769-78. doi: 10.1261/rna.2112110. Epub 2010 Jul 22.

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