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Items: 15

1.

De Novo Sequencing and Hybrid Assembly of the Biofuel Crop Jatropha curcas L.: Identification of Quantitative Trait Loci for Geminivirus Resistance.

Kancharla N, Jalali S, Narasimham JV, Nair V, Yepuri V, Thakkar B, Reddy VB, Kuriakose B, Madan N, S A.

Genes (Basel). 2019 Jan 21;10(1). pii: E69. doi: 10.3390/genes10010069.

2.

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs.

Jalali S, Gandhi S, Scaria V.

Front Mol Biosci. 2018 Apr 4;5:27. doi: 10.3389/fmolb.2018.00027. eCollection 2018.

3.

Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.

Jalali S, Singh A, Maiti S, Scaria V.

J Transl Med. 2017 Sep 2;15(1):186. doi: 10.1186/s12967-017-1282-9.

4.
5.

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.

Jalali S, Kohli S, Latka C, Bhatia S, Vellarikal SK, Sivasubbu S, Scaria V, Ramachandran S.

PLoS One. 2015 Jun 2;10(6):e0128711. doi: 10.1371/journal.pone.0128711. eCollection 2015.

6.

Computational approaches towards understanding human long non-coding RNA biology.

Jalali S, Kapoor S, Sivadas A, Bhartiya D, Scaria V.

Bioinformatics. 2015 Jul 15;31(14):2241-51. doi: 10.1093/bioinformatics/btv148. Epub 2015 Mar 15. Review.

PMID:
25777523
7.

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Singh M, Bhartiya D, Maini J, Sharma M, Singh AR, Kadarkaraisamy S, Rana R, Sabharwal A, Nanda S, Ramachandran A, Mittal A, Kapoor S, Sehgal P, Asad Z, Kaushik K, Vellarikkal SK, Jagga D, Muthuswami M, Chauhan RK, Leonard E, Priyadarshini R, Halimani M, Malhotra S, Patowary A, Vishwakarma H, Joshi P, Bhardwaj V, Bhaumik A, Bhatt B, Jha A, Kumar A, Budakoti P, Lalwani MK, Meli R, Jalali S, Joshi K, Pal K, Dhiman H, Laddha SV, Jadhav V, Singh N, Pandey V, Sachidanandan C, Ekker SC, Klee EW, Scaria V, Sivasubbu S.

Database (Oxford). 2014 Feb 26;2014:bau011. doi: 10.1093/database/bau011. Print 2014.

8.

Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S.

PLoS One. 2013 Dec 31;8(12):e83616. doi: 10.1371/journal.pone.0083616. eCollection 2013.

9.

Distinct patterns of genetic variations in potential functional elements in long noncoding RNAs.

Bhartiya D, Jalali S, Ghosh S, Scaria V.

Hum Mutat. 2014 Feb;35(2):192-201. doi: 10.1002/humu.22472. Epub 2013 Nov 25.

PMID:
24178912
10.

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.

Bhartiya D, Pal K, Ghosh S, Kapoor S, Jalali S, Panwar B, Jain S, Sati S, Sengupta S, Sachidanandan C, Raghava GP, Sivasubbu S, Scaria V.

Database (Oxford). 2013 Jul 11;2013:bat034. doi: 10.1093/database/bat034. Print 2013.

11.

MitoLSDB: a comprehensive resource to study genotype to phenotype correlations in human mitochondrial DNA variations.

K S, Jalali S, Scaria V, Bhardwaj A.

PLoS One. 2013 Apr 9;8(4):e60066. doi: 10.1371/journal.pone.0060066. Print 2013.

12.

Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

Jalali S, Bhartiya D, Lalwani MK, Sivasubbu S, Scaria V.

PLoS One. 2013;8(2):e53823. doi: 10.1371/journal.pone.0053823. Epub 2013 Feb 6.

13.

Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs.

Jalali S, Jayaraj GG, Scaria V.

Biol Direct. 2012 Aug 7;7:25. doi: 10.1186/1745-6150-7-25.

14.

Conceptual approaches for lncRNA drug discovery and future strategies.

Bhartiya D, Kapoor S, Jalali S, Sati S, Kaushik K, Sachidanandan C, Sivasubbu S, Scaria V.

Expert Opin Drug Discov. 2012 Jun;7(6):503-13. doi: 10.1517/17460441.2012.682055. Epub 2012 May 5. Review.

PMID:
22559214
15.

FishMap Zv8 update--a genomic regulatory map of zebrafish.

Bhartiya D, Maini J, Sharma M, Joshi P, Laddha SV, Jalali S, Patowary A, Purkanti R, Lalwani M, Singh AR, Chauhan R, Singh N, Bhardwaj A, Scaria V, Sivasubbu S.

Zebrafish. 2010 Jun;7(2):179-80. doi: 10.1089/zeb.2009.0624.

PMID:
20528264

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