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Items: 1 to 20 of 37

1.

Pseudomonad reverse carbon catabolite repression, interspecies metabolite exchange, and consortial division of labor.

Park H, McGill SL, Arnold AD, Carlson RP.

Cell Mol Life Sci. 2020 Feb;77(3):395-413. doi: 10.1007/s00018-019-03377-x. Epub 2019 Nov 25. Review.

PMID:
31768608
2.

Integrated thermodynamic analysis of electron bifurcating [FeFe]-hydrogenase to inform anaerobic metabolism and H2 production.

Jay ZJ, Hunt KA, Chou KJ, Schut GJ, Maness PC, Adams MWW, Carlson RP.

Biochim Biophys Acta Bioenerg. 2020 Jan 1;1861(1):148087. doi: 10.1016/j.bbabio.2019.148087. Epub 2019 Nov 8.

PMID:
31669490
3.

Reverse diauxie phenotype in Pseudomonas aeruginosa biofilm revealed by exometabolomics and label-free proteomics.

Yung YP, McGill SL, Chen H, Park H, Carlson RP, Hanley L.

NPJ Biofilms Microbiomes. 2019 Oct 25;5:31. doi: 10.1038/s41522-019-0104-7. eCollection 2019.

4.

In Silico Metabolic Design of Two-Strain Biofilm Systems Predicts Enhanced Biomass Production and Biochemical Synthesis.

Patel A, Carlson RP, Henson MA.

Biotechnol J. 2019 Jul;14(7):e1800511. doi: 10.1002/biot.201800511. Epub 2019 May 20.

PMID:
30927492
5.

Role of resource allocation and transport in emergence of cross-feeding in microbial consortia.

Schepens D, Carlson RP, Heys J, Beck AE, Gedeon T.

J Theor Biol. 2019 Apr 21;467:150-163. doi: 10.1016/j.jtbi.2019.01.030. Epub 2019 Jan 29.

PMID:
30707974
6.

Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community.

Hunt KA, Jennings RM, Inskeep WP, Carlson RP.

PLoS Comput Biol. 2018 Sep 27;14(9):e1006431. doi: 10.1371/journal.pcbi.1006431. eCollection 2018 Sep.

7.

Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia.

Carlson RP, Beck AE, Phalak P, Fields MW, Gedeon T, Hanley L, Harcombe WR, Henson MA, Heys JJ.

Biochem Soc Trans. 2018 Apr 17;46(2):269-284. doi: 10.1042/BST20170242. Epub 2018 Feb 22. Review.

PMID:
29472366
8.

In a quest for engineering acidophiles for biomining applications: challenges and opportunities.

Gumulya Y, Boxall NJ, Khaleque HN, Santala V, Carlson RP, Kaksonen AH.

Genes (Basel). 2018 Feb 21;9(2). pii: E116. doi: 10.3390/genes9020116. Review.

9.

The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Ledbetter RN, Garcia Costas AM, Lubner CE, Mulder DW, Tokmina-Lukaszewska M, Artz JH, Patterson A, Magnuson TS, Jay ZJ, Duan HD, Miller J, Plunkett MH, Hoben JP, Barney BM, Carlson RP, Miller AF, Bothner B, King PW, Peters JW, Seefeldt LC.

Biochemistry. 2017 Aug 15;56(32):4177-4190. doi: 10.1021/acs.biochem.7b00389. Epub 2017 Aug 3.

PMID:
28704608
10.

Combining Targeted Metabolomic Data with a Model of Glucose Metabolism: Toward Progress in Chondrocyte Mechanotransduction.

Salinas D, Minor CA, Carlson RP, McCutchen CN, Mumey BM, June RK.

PLoS One. 2017 Jan 5;12(1):e0168326. doi: 10.1371/journal.pone.0168326. eCollection 2017.

11.

Effects of Spatial Localization on Microbial Consortia Growth.

Venters M, Carlson RP, Gedeon T, Heys JJ.

PLoS One. 2017 Jan 3;12(1):e0168592. doi: 10.1371/journal.pone.0168592. eCollection 2017.

12.

Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species.

Phalak P, Chen J, Carlson RP, Henson MA.

BMC Syst Biol. 2016 Sep 7;10(1):90. doi: 10.1186/s12918-016-0334-8.

13.

Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community.

Hunt KA, Jennings RD, Inskeep WP, Carlson RP.

Environ Microbiol. 2016 Dec;18(12):4946-4960. doi: 10.1111/1462-2920.13444. Epub 2016 Aug 11.

14.

Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine.

Carlson RP, Oshota O, Shipman M, Caserta JA, Hu P, Saunders CW, Xu J, Jay ZJ, Reeder N, Richards A, Pettigrew C, Peyton BM.

Extremophiles. 2016 May;20(3):261-74. doi: 10.1007/s00792-015-0806-6. Epub 2016 Feb 18.

PMID:
26888357
15.
16.

Design, construction, and characterization methodologies for synthetic microbial consortia.

Bernstein HC, Carlson RP.

Methods Mol Biol. 2014;1151:49-68. doi: 10.1007/978-1-4939-0554-6_4.

PMID:
24838878
17.

Physiological and proteomic analysis of Escherichia coli iron-limited chemostat growth.

Folsom JP, Parker AE, Carlson RP.

J Bacteriol. 2014 Aug;196(15):2748-61. doi: 10.1128/JB.01606-14. Epub 2014 May 16.

18.

Quantitative NMR metabolite profiling of methicillin-resistant and methicillin-susceptible Staphylococcus aureus discriminates between biofilm and planktonic phenotypes.

Ammons MC, Tripet BP, Carlson RP, Kirker KR, Gross MA, Stanisich JJ, CopiƩ V.

J Proteome Res. 2014 Jun 6;13(6):2973-85. doi: 10.1021/pr500120c. Epub 2014 May 8.

19.

Direct measurement and characterization of active photosynthesis zones inside wastewater remediating and biofuel producing microalgal biofilms.

Bernstein HC, Kesaano M, Moll K, Smith T, Gerlach R, Carlson RP, Miller CD, Peyton BM, Cooksey KE, Gardner RD, Sims RC.

Bioresour Technol. 2014 Mar;156:206-15. doi: 10.1016/j.biortech.2014.01.001. Epub 2014 Jan 10.

PMID:
24508901
20.

Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.

Hunt KA, Folsom JP, Taffs RL, Carlson RP.

Bioinformatics. 2014 Jun 1;30(11):1569-78. doi: 10.1093/bioinformatics/btu021. Epub 2014 Feb 3.

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