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Items: 1 to 20 of 34

1.

In Silico Metabolic Design of Two-Strain Biofilm Systems Predicts Enhanced Biomass Production and Biochemical Synthesis.

Patel A, Carlson RP, Henson MA.

Biotechnol J. 2019 Mar 30:e1800511. doi: 10.1002/biot.201800511. [Epub ahead of print]

PMID:
30927492
2.

Role of resource allocation and transport in emergence of cross-feeding in microbial consortia.

Schepens D, Carlson RP, Heys J, Beck AE, Gedeon T.

J Theor Biol. 2019 Apr 21;467:150-163. doi: 10.1016/j.jtbi.2019.01.030. Epub 2019 Jan 29.

PMID:
30707974
3.

Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community.

Hunt KA, Jennings RM, Inskeep WP, Carlson RP.

PLoS Comput Biol. 2018 Sep 27;14(9):e1006431. doi: 10.1371/journal.pcbi.1006431. eCollection 2018 Sep.

4.

Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia.

Carlson RP, Beck AE, Phalak P, Fields MW, Gedeon T, Hanley L, Harcombe WR, Henson MA, Heys JJ.

Biochem Soc Trans. 2018 Apr 17;46(2):269-284. doi: 10.1042/BST20170242. Epub 2018 Feb 22. Review.

PMID:
29472366
5.

In a quest for engineering acidophiles for biomining applications: challenges and opportunities.

Gumulya Y, Boxall NJ, Khaleque HN, Santala V, Carlson RP, Kaksonen AH.

Genes (Basel). 2018 Feb 21;9(2). pii: E116. doi: 10.3390/genes9020116. Review.

6.

The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Ledbetter RN, Garcia Costas AM, Lubner CE, Mulder DW, Tokmina-Lukaszewska M, Artz JH, Patterson A, Magnuson TS, Jay ZJ, Duan HD, Miller J, Plunkett MH, Hoben JP, Barney BM, Carlson RP, Miller AF, Bothner B, King PW, Peters JW, Seefeldt LC.

Biochemistry. 2017 Aug 15;56(32):4177-4190. doi: 10.1021/acs.biochem.7b00389. Epub 2017 Aug 3.

PMID:
28704608
7.

Combining Targeted Metabolomic Data with a Model of Glucose Metabolism: Toward Progress in Chondrocyte Mechanotransduction.

Salinas D, Minor CA, Carlson RP, McCutchen CN, Mumey BM, June RK.

PLoS One. 2017 Jan 5;12(1):e0168326. doi: 10.1371/journal.pone.0168326. eCollection 2017.

8.

Effects of Spatial Localization on Microbial Consortia Growth.

Venters M, Carlson RP, Gedeon T, Heys JJ.

PLoS One. 2017 Jan 3;12(1):e0168592. doi: 10.1371/journal.pone.0168592. eCollection 2017.

9.

Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species.

Phalak P, Chen J, Carlson RP, Henson MA.

BMC Syst Biol. 2016 Sep 7;10(1):90. doi: 10.1186/s12918-016-0334-8.

10.

Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community.

Hunt KA, Jennings RD, Inskeep WP, Carlson RP.

Environ Microbiol. 2016 Dec;18(12):4946-4960. doi: 10.1111/1462-2920.13444. Epub 2016 Aug 11.

11.

Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine.

Carlson RP, Oshota O, Shipman M, Caserta JA, Hu P, Saunders CW, Xu J, Jay ZJ, Reeder N, Richards A, Pettigrew C, Peyton BM.

Extremophiles. 2016 May;20(3):261-74. doi: 10.1007/s00792-015-0806-6. Epub 2016 Feb 18.

PMID:
26888357
13.

Design, construction, and characterization methodologies for synthetic microbial consortia.

Bernstein HC, Carlson RP.

Methods Mol Biol. 2014;1151:49-68. doi: 10.1007/978-1-4939-0554-6_4.

PMID:
24838878
14.

Physiological and proteomic analysis of Escherichia coli iron-limited chemostat growth.

Folsom JP, Parker AE, Carlson RP.

J Bacteriol. 2014 Aug;196(15):2748-61. doi: 10.1128/JB.01606-14. Epub 2014 May 16.

15.

Quantitative NMR metabolite profiling of methicillin-resistant and methicillin-susceptible Staphylococcus aureus discriminates between biofilm and planktonic phenotypes.

Ammons MC, Tripet BP, Carlson RP, Kirker KR, Gross MA, Stanisich JJ, CopiƩ V.

J Proteome Res. 2014 Jun 6;13(6):2973-85. doi: 10.1021/pr500120c. Epub 2014 May 8.

16.

Direct measurement and characterization of active photosynthesis zones inside wastewater remediating and biofuel producing microalgal biofilms.

Bernstein HC, Kesaano M, Moll K, Smith T, Gerlach R, Carlson RP, Miller CD, Peyton BM, Cooksey KE, Gardner RD, Sims RC.

Bioresour Technol. 2014 Mar;156:206-15. doi: 10.1016/j.biortech.2014.01.001. Epub 2014 Jan 10.

PMID:
24508901
17.

Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition.

Hunt KA, Folsom JP, Taffs RL, Carlson RP.

Bioinformatics. 2014 Jun 1;30(11):1569-78. doi: 10.1093/bioinformatics/btu021. Epub 2014 Feb 3.

18.

Differentiation of microbial species and strains in coculture biofilms by multivariate analysis of laser desorption postionization mass spectra.

Bhardwaj C, Cui Y, Hofstetter T, Liu SY, Bernstein HC, Carlson RP, Ahmed M, Hanley L.

Analyst. 2013 Nov 21;138(22):6844-51. doi: 10.1039/c3an01389h.

19.

Molecular imaging and depth profiling of biomaterials interfaces by femtosecond laser desorption postionization mass spectrometry.

Cui Y, Bhardwaj C, Milasinovic S, Carlson RP, Gordon RJ, Hanley L.

ACS Appl Mater Interfaces. 2013 Oct 9;5(19):9269-75. doi: 10.1021/am4020633. Epub 2013 Aug 15.

PMID:
23947564
20.

In situ analysis of oxygen consumption and diffusive transport in high-temperature acidic iron-oxide microbial mats.

Bernstein HC, Beam JP, Kozubal MA, Carlson RP, Inskeep WP.

Environ Microbiol. 2013 Aug;15(8):2360-70. doi: 10.1111/1462-2920.12109. Epub 2013 Mar 21.

PMID:
23516993

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