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Items: 1 to 20 of 36

1.

A Method for the Structure-Based, Genome-Wide Analysis of Bacterial Intergenic Sequences Identifies Shared Compositional and Functional Features.

Lenzini L, Di Patti F, Livi R, Fondi M, Fani R, Mengoni A.

Genes (Basel). 2019 Oct 22;10(10). pii: E834. doi: 10.3390/genes10100834.

2.

Resilience for stochastic systems interacting via a quasi-degenerate network.

Nicoletti S, Fanelli D, Zagli N, Asllani M, Battistelli G, Carletti T, Chisci L, Innocenti G, Livi R.

Chaos. 2019 Aug;29(8):083123. doi: 10.1063/1.5099538.

PMID:
31472518
3.

Desynchronization and pattern formation in a noisy feed-forward oscillator network.

Zankoc C, Fanelli D, Ginelli F, Livi R.

Phys Rev E. 2019 Jan;99(1-1):012303. doi: 10.1103/PhysRevE.99.012303.

PMID:
30780209
4.

Heat transport in oscillator chains with long-range interactions coupled to thermal reservoirs.

Iubini S, Di Cintio P, Lepri S, Livi R, Casetti L.

Phys Rev E. 2018 Mar;97(3-1):032102. doi: 10.1103/PhysRevE.97.032102.

PMID:
29776067
5.

Noise-driven neuromorphic tuned amplifier.

Fanelli D, Ginelli F, Livi R, Zagli N, Zankoc C.

Phys Rev E. 2017 Dec;96(6-1):062313. doi: 10.1103/PhysRevE.96.062313. Epub 2017 Dec 26.

PMID:
29347454
6.

Intertangled stochastic motifs in networks of excitatory-inhibitory units.

Zankoc C, Fanelli D, Ginelli F, Livi R.

Phys Rev E. 2017 Aug;96(2-1):022308. doi: 10.1103/PhysRevE.96.022308. Epub 2017 Aug 11.

PMID:
28950520
7.

Multiparticle collision simulations of two-dimensional one-component plasmas: Anomalous transport and dimensional crossovers.

Di Cintio P, Livi R, Lepri S, Ciraolo G.

Phys Rev E. 2017 Apr;95(4-1):043203. doi: 10.1103/PhysRevE.95.043203. Epub 2017 Apr 12.

PMID:
28505790
8.

Neural networks with excitatory and inhibitory components: Direct and inverse problems by a mean-field approach.

di Volo M, Burioni R, Casartelli M, Livi R, Vezzani A.

Phys Rev E. 2016 Jan;93(1):012305. doi: 10.1103/PhysRevE.93.012305. Epub 2016 Jan 13.

PMID:
26871090
9.

Anomalous dynamical scaling in anharmonic chains and plasma models with multiparticle collisions.

Di Cintio P, Livi R, Bufferand H, Ciraolo G, Lepri S, Straka MJ.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062108. doi: 10.1103/PhysRevE.92.062108. Epub 2015 Dec 4.

PMID:
26764633
10.

Heterogeneous mean field for neural networks with short-term plasticity.

di Volo M, Burioni R, Casartelli M, Livi R, Vezzani A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022811. Epub 2014 Aug 25.

PMID:
25215785
11.

Variation and constraints in species-specific promoter sequences.

Calistri E, Buiatti M, Livi R.

J Theor Biol. 2014 Dec 21;363:357-66. doi: 10.1016/j.jtbi.2014.08.006. Epub 2014 Aug 19.

PMID:
25149367
12.

Boundary-induced instabilities in coupled oscillators.

Iubini S, Lepri S, Livi R, Politi A.

Phys Rev Lett. 2014 Apr 4;112(13):134101. Epub 2014 Apr 1.

PMID:
24745424
13.

Average synaptic activity and neural networks topology: a global inverse problem.

Burioni R, Casartelli M, di Volo M, Livi R, Vezzani A.

Sci Rep. 2014 Mar 11;4:4336. doi: 10.1038/srep04336.

14.

Genome-wide analysis of promoters: clustering by alignment and analysis of regular patterns.

Pettinato L, Calistri E, Di Patti F, Livi R, Luccioli S.

PLoS One. 2014 Jan 22;9(1):e85260. doi: 10.1371/journal.pone.0085260. eCollection 2014.

15.

Conformational landscape of N-glycosylated peptides detecting autoantibodies in multiple sclerosis, revealed by Hamiltonian replica exchange.

Guardiani C, Signorini GF, Livi R, Papini AM, Procacci P.

J Phys Chem B. 2012 May 10;116(18):5458-67. doi: 10.1021/jp301442n. Epub 2012 Apr 30.

PMID:
22519978
16.

Evolutionary trends of GC/AT distribution patterns in promoters.

Calistri E, Livi R, Buiatti M.

Mol Phylogenet Evol. 2011 Aug;60(2):228-35. doi: 10.1016/j.ympev.2011.04.015. Epub 2011 May 7.

PMID:
21554969
17.

Conformational structure of the MOG-derived peptide 101-108 in solution.

Guardiani C, Marsili S, Marchetti S, Gambi C, Procacci P, Livi R.

Biopolymers. 2011;96(3):245-51. doi: 10.1002/bip.21510.

PMID:
20549678
18.

Collective oscillations in disordered neural networks.

Olmi S, Livi R, Politi A, Torcini A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 2):046119. Epub 2010 Apr 28.

PMID:
20481798
19.

Fragment 101-108 of myelin oligodendrocyte glycoprotein: a possible lead compound for multiple sclerosis.

Guardiani C, Marsili S, Procacci P, Livi R.

J Am Chem Soc. 2009 Dec 2;131(47):17176-84. doi: 10.1021/ja905154j.

PMID:
19891505
20.

Stochastic dynamics of model proteins on a directed graph.

Bongini L, Casetti L, Livi R, Politi A, Torcini A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jun;79(6 Pt 1):061925. Epub 2009 Jun 30.

PMID:
19658542

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