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Items: 1 to 20 of 68

1.

Diversification history in the Dendrocincla fuliginosa complex (Aves: Dendrocolaptidae): insights from broad geographic sampling.

Schultz ED, Pérez-Emán J, Aleixo A, Miyaki CY, Brumfield RT, Cracraft J, Ribas CC.

Mol Phylogenet Evol. 2019 Aug 17:106581. doi: 10.1016/j.ympev.2019.106581. [Epub ahead of print]

PMID:
31430551
2.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

3.

Fifty shades of brown: Macroevolution of plumage brightness in the Furnariida, a large clade of drab Neotropical passerines.

Marcondes RS, Brumfield RT.

Evolution. 2019 Apr;73(4):704-719. doi: 10.1111/evo.13707. Epub 2019 Mar 14.

PMID:
30816993
4.

Evolutionary dynamics of hybridization and introgression following the recent colonization of Glossy Ibis (Aves: Plegadis falcinellus) into the New World.

Oswald JA, Harvey MG, Remsen RC, Foxworth DU, Dittmann DL, Cardiff SW, Brumfield RT.

Mol Ecol. 2019 Apr;28(7):1675-1691. doi: 10.1111/mec.15008. Epub 2019 Apr 10.

PMID:
30614583
5.

The dual role of Amazonian rivers in the generation and maintenance of avian diversity.

Naka LN, Brumfield RT.

Sci Adv. 2018 Aug 1;4(8):eaar8575. doi: 10.1126/sciadv.aar8575. eCollection 2018 Aug.

7.

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds.

Harvey MG, Aleixo A, Ribas CC, Brumfield RT.

Am Nat. 2017 Nov;190(5):631-648. doi: 10.1086/693856. Epub 2017 Sep 11.

PMID:
29053360
8.

Correction: A latitudinal phylogeographic diversity gradient in birds.

Smith BT, Seeholzer GF, Harvey MG, Cuervo AM, Brumfield RT.

PLoS Biol. 2017 Jul 14;15(7):e1002610. doi: 10.1371/journal.pbio.1002610. eCollection 2017 Jul.

9.

Positive association between population genetic differentiation and speciation rates in New World birds.

Harvey MG, Seeholzer GF, Smith BT, Rabosky DL, Cuervo AM, Brumfield RT.

Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):6328-6333. doi: 10.1073/pnas.1617397114. Epub 2017 May 30.

10.

A latitudinal phylogeographic diversity gradient in birds.

Smith BT, Seeholzer GF, Harvey MG, Cuervo AM, Brumfield RT.

PLoS Biol. 2017 Apr 13;15(4):e2001073. doi: 10.1371/journal.pbio.2001073. eCollection 2017 Apr. Erratum in: PLoS Biol. 2017 Jul 14;15(7):e1002610.

11.

Niche evolution and diversification in a Neotropical radiation of birds (Aves: Furnariidae).

Seeholzer GF, Claramunt S, Brumfield RT.

Evolution. 2017 Mar;71(3):702-715. doi: 10.1111/evo.13177. Epub 2017 Feb 8.

PMID:
28071791
12.

Behavioural response to song and genetic divergence in two subspecies of white-crowned sparrows (Zonotrichia leucophrys).

Lipshutz SE, Overcast IA, Hickerson MJ, Brumfield RT, Derryberry EP.

Mol Ecol. 2017 Jun;26(11):3011-3027. doi: 10.1111/mec.14002. Epub 2017 Jan 27.

PMID:
28036146
13.

Systematics and biogeography of the Automolus infuscatus complex (Aves; Furnariidae): Cryptic diversity reveals western Amazonia as the origin of a transcontinental radiation.

Schultz ED, Burney CW, Brumfield RT, Polo EM, Cracraft J, Ribas CC.

Mol Phylogenet Evol. 2017 Feb;107:503-515. doi: 10.1016/j.ympev.2016.12.023. Epub 2016 Dec 22.

14.

Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics.

Harvey MG, Smith BT, Glenn TC, Faircloth BC, Brumfield RT.

Syst Biol. 2016 Sep;65(5):910-24. doi: 10.1093/sysbio/syw036. Epub 2016 Jun 10. Review.

PMID:
27288477
15.

The Mouse-colored Tyrannulet (Phaeomyias murina) is a species complex that includes the Cocos Flycatcher (Nesotriccus ridgwayi), an island form that underwent a population bottleneck.

Zucker MR, Harvey MG, Oswald JA, Cuervo A, Derryberry E, Brumfield RT.

Mol Phylogenet Evol. 2016 Aug;101:294-302. doi: 10.1016/j.ympev.2016.04.031. Epub 2016 Apr 25.

PMID:
27126184
16.

Comparative Gut Microbiota of 59 Neotropical Bird Species.

Hird SM, Sánchez C, Carstens BC, Brumfield RT.

Front Microbiol. 2015 Dec 21;6:1403. doi: 10.3389/fmicb.2015.01403. eCollection 2015.

17.

Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species.

Harvey MG, Judy CD, Seeholzer GF, Maley JM, Graves GR, Brumfield RT.

PeerJ. 2015 Apr 21;3:e895. doi: 10.7717/peerj.895. eCollection 2015.

18.

Geographic variation and phylogenetic relationships of Myiopagis olallai (Aves: Passeriformes; Tyrannidae), with the description of two new taxa from the Northern Andes.

Cuervo AM, Stiles FG, Lentino M, Brumfield RT, Derryberry EP.

Zootaxa. 2014 Oct 14;3873(1):1-24. doi: 10.11646/zootaxa.3873.1.1.

PMID:
25544202
19.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

20.

Comparative genomics reveals insights into avian genome evolution and adaptation.

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J.

Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.

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