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Items: 12

1.

Computational Methods for Resting-State EEG of Patients With Disorders of Consciousness.

Corchs S, Chioma G, Dondi R, Gasparini F, Manzoni S, Markowska-Kacznar U, Mauri G, Zoppis I, Morreale A.

Front Neurosci. 2019 Aug 6;13:807. doi: 10.3389/fnins.2019.00807. eCollection 2019. Review.

2.

Reconciling multiple genes trees via segmental duplications and losses.

Dondi R, Lafond M, Scornavacca C.

Algorithms Mol Biol. 2019 Mar 20;14:7. doi: 10.1186/s13015-019-0139-6. eCollection 2019.

3.

Approximating the correction of weighted and unweighted orthology and paralogy relations.

Dondi R, Lafond M, El-Mabrouk N.

Algorithms Mol Biol. 2017 Mar 11;12:4. doi: 10.1186/s13015-017-0096-x. eCollection 2017.

4.

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.

Bonizzoni P, Dondi R, Klau GW, Pirola Y, Pisanti N, Zaccaria S.

J Comput Biol. 2016 Sep;23(9):718-36. doi: 10.1089/cmb.2015.0220. Epub 2016 Jun 9.

PMID:
27280382
5.

The link between orthology relations and gene trees: a correction perspective.

Lafond M, Dondi R, El-Mabrouk N.

Algorithms Mol Biol. 2016 Apr 16;11:4. doi: 10.1186/s13015-016-0067-7. eCollection 2016.

6.

HapCol: accurate and memory-efficient haplotype assembly from long reads.

Pirola Y, Zaccaria S, Dondi R, Klau GW, Pisanti N, Bonizzoni P.

Bioinformatics. 2016 Jun 1;32(11):1610-7. doi: 10.1093/bioinformatics/btv495. Epub 2015 Aug 26.

PMID:
26315913
7.

Polytomy refinement for the correction of dubious duplications in gene trees.

Lafond M, Chauve C, Dondi R, El-Mabrouk N.

Bioinformatics. 2014 Sep 1;30(17):i519-26. doi: 10.1093/bioinformatics/btu463.

8.

Pure parsimony xor haplotyping.

Bonizzoni P, Della Vedova G, Dondi R, Pirola Y, Rizzi R.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec;7(4):598-610. doi: 10.1109/TCBB.2010.52.

PMID:
20498511
9.

Experimental analysis of a new algorithm for partial haplotype completion.

Bonizzoni P, Della Vedova G, Dondi R, Mariani L.

Int J Bioinform Res Appl. 2005;1(4):461-73.

PMID:
18048149
10.

Exemplar longest common subsequence.

Bonizzoni P, Della Vedova G, Dondi R, Fertin G, Rizzi R, Vialette S.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):535-43.

PMID:
17975265
11.

A novel method for signal transduction network inference from indirect experimental evidence.

Albert R, DasGupta B, Dondi R, Kachalo S, Sontag E, Zelikovsky A, Westbrooks K.

J Comput Biol. 2007 Sep;14(7):927-49.

PMID:
17803371
12.

A library of efficient bioinformatics algorithms.

Della Vedova G, Dondi R.

Appl Bioinformatics. 2003;2(2):117-21. Review.

PMID:
15130828

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