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Items: 1 to 20 of 44

1.

Earth history and the passerine superradiation.

Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, Cuervo AM, Derryberry EP, Glenn TC, Harvey MG, Hosner PA, Joseph L, Kimball RT, Mack AL, Miskelly CM, Peterson AT, Robbins MB, Sheldon FH, Silveira LF, Smith BT, White ND, Moyle RG, Faircloth BC.

Proc Natl Acad Sci U S A. 2019 Apr 16;116(16):7916-7925. doi: 10.1073/pnas.1813206116. Epub 2019 Apr 1.

2.

Insight from an ultraconserved element bait set designed for hemipteran phylogenetics integrated with genomic resources.

Kieran TJ, Gordon ERL, Forthman M, Hoey-Chamberlain R, Kimball RT, Faircloth BC, Weirauch C, Glenn TC.

Mol Phylogenet Evol. 2019 Jan;130:297-303. doi: 10.1016/j.ympev.2018.10.026. Epub 2018 Oct 22.

PMID:
30359745
3.

What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?

Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2019 Jan;130:132-142. doi: 10.1016/j.ympev.2018.10.008. Epub 2018 Oct 12.

PMID:
30321694
4.

A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: Placement of the partridge genus Tropicoperdix within the galliformes.

Chen, Braun EL, Forthman M, Kimball RT, Zhang Z.

Mol Phylogenet Evol. 2018 Dec;129:304-314. doi: 10.1016/j.ympev.2018.09.005. Epub 2018 Sep 7.

PMID:
30201427
5.

Comparative Genomics Reveals a Burst of Homoplasy-Free Numt Insertions.

Liang B, Wang N, Li N, Kimball RT, Braun EL.

Mol Biol Evol. 2018 Aug 1;35(8):2060-2064. doi: 10.1093/molbev/msy112.

PMID:
29860531
6.

Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa.

Eimanifar A, Kimball RT, Braun EL, Ellis JD.

Sci Rep. 2018 Jan 22;8(1):1333. doi: 10.1038/s41598-018-19759-3.

7.

Rapid morphological change of a top predator with the invasion of a novel prey.

Cattau CE, Fletcher RJ Jr, Kimball RT, Miller CW, Kitchens WM.

Nat Ecol Evol. 2018 Jan;2(1):108-115. doi: 10.1038/s41559-017-0378-1. Epub 2017 Nov 27.

PMID:
29180705
8.

How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes).

Hosner PA, Tobias JA, Braun EL, Kimball RT.

Proc Biol Sci. 2017 May 17;284(1854). pii: 20170210. doi: 10.1098/rspb.2017.0210.

9.

Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling.

Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, Yuri T, Braun EL.

Syst Biol. 2017 Sep 1;66(5):857-879. doi: 10.1093/sysbio/syx041.

PMID:
28369655
10.

Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data.

Wang N, Hosner PA, Liang B, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2017 Apr;109:217-225. doi: 10.1016/j.ympev.2017.01.006. Epub 2017 Jan 11.

PMID:
28088402
11.

The complex evolutionary history of big-eared horseshoe bats (Rhinolophus macrotis complex): insights from genetic, morphological and acoustic data.

Sun K, Kimball RT, Liu T, Wei X, Jin L, Jiang T, Lin A, Feng J.

Sci Rep. 2016 Oct 17;6:35417. doi: 10.1038/srep35417.

12.
13.

Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences.

Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2016 May;98:123-32. doi: 10.1016/j.ympev.2016.02.003. Epub 2016 Feb 12.

PMID:
26879712
14.

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.

Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL.

Syst Biol. 2016 Jul;65(4):612-27. doi: 10.1093/sysbio/syw014. Epub 2016 Feb 10.

PMID:
26865273
15.

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).

Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Biol Evol. 2016 Apr;33(4):1110-25. doi: 10.1093/molbev/msv347. Epub 2015 Dec 29.

PMID:
26715628
16.

Building the avian tree of life using a large-scale, sparse supermatrix.

Burleigh JG, Kimball RT, Braun EL.

Mol Phylogenet Evol. 2015 Mar;84:53-63. doi: 10.1016/j.ympev.2014.12.003. Epub 2014 Dec 27.

PMID:
25550149
17.

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Proc Biol Sci. 2014 Sep 7;281(1790). pii: 20140823. doi: 10.1098/rspb.2014.0823.

18.

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2014 Sep;78:314-23. doi: 10.1016/j.ympev.2014.06.003. Epub 2014 Jun 12.

PMID:
24929245
19.

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix.

Kimball RT, Braun EL.

PeerJ. 2014 Apr 22;2:e361. doi: 10.7717/peerj.361. eCollection 2014.

20.

Geographic variation in the acoustic traits of greater horseshoe bats: testing the importance of drift and ecological selection in evolutionary processes.

Sun K, Luo L, Kimball RT, Wei X, Jin L, Jiang T, Li G, Feng J.

PLoS One. 2013 Aug 8;8(8):e70368. doi: 10.1371/journal.pone.0070368. eCollection 2013.

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