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Items: 1 to 20 of 39

1.

Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts.

Gavrilov SN, Korzhenkov AA, Kublanov IV, Bargiela R, Zamana LV, Popova AA, Toshchakov SV, Golyshin PN, Golyshina OV.

Front Microbiol. 2019 Jul 17;10:1573. doi: 10.3389/fmicb.2019.01573. eCollection 2019.

2.

Diversity of "Ca. Micrarchaeota" in Two Distinct Types of Acidic Environments and Their Associations with Thermoplasmatales.

Golyshina OV, Bargiela R, Toshchakov SV, Chernyh NA, Ramayah S, Korzhenkov AA, Kublanov IV, Golyshin PN.

Genes (Basel). 2019 Jun 15;10(6). pii: E461. doi: 10.3390/genes10060461.

3.

Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity.

Korzhenkov AA, Toshchakov SV, Bargiela R, Gibbard H, Ferrer M, Teplyuk AV, Jones DL, Kublanov IV, Golyshin PN, Golyshina OV.

Microbiome. 2019 Jan 28;7(1):11. doi: 10.1186/s40168-019-0623-8.

4.

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.

Ferrer M, Méndez-García C, Bargiela R, Chow J, Alonso S, García-Moyano A, Bjerga GEK, Steen IH, Schwabe T, Blom C, Vester J, Weckbecker A, Shahgaldian P, de Carvalho CCCR, Meskys R, Zanaroli G, Glöckner FO, Fernández-Guerra A, Thambisetty S, de la Calle F, Golyshina OV, Yakimov MM, Jaeger KE, Yakunin AF, Streit WR, McMeel O, Calewaert JB, Tonné N, Golyshin PN; INMARE Consortium.

FEMS Microbiol Lett. 2019 Jan 1;366(1). doi: 10.1093/femsle/fny285.

5.

Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with 'ARMAN'.

Golyshina OV, Bargiela R, Golyshin PN.

Extremophiles. 2019 Jan;23(1):1-7. doi: 10.1007/s00792-018-1071-2. Epub 2018 Nov 29. Review.

6.

Bioprospecting Reveals Class III ω-Transaminases Converting Bulky Ketones and Environmentally Relevant Polyamines.

Coscolín C, Katzke N, García-Moyano A, Navarro-Fernández J, Almendral D, Martínez-Martínez M, Bollinger A, Bargiela R, Gertler C, Chernikova TN, Rojo D, Barbas C, Tran H, Golyshina OV, Koch R, Yakimov MM, Bjerga GEK, Golyshin PN, Jaeger KE, Ferrer M.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e02404-18. doi: 10.1128/AEM.02404-18. Print 2019 Jan 15.

7.

Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota.

Deusch S, Serrano-Villar S, Rojo D, Martínez-Martínez M, Bargiela R, Vázquez-Castellanos JF, Sainz T, Barbas C, Moya A, Moreno S, Gosalbes MJ, Estrada V, Seifert J, Ferrer M.

AIDS. 2018 Jun 19;32(10):1229-1237. doi: 10.1097/QAD.0000000000001831.

PMID:
29683848
8.

Rational Engineering of Multiple Active Sites in an Ester Hydrolase.

Santiago G, Martínez-Martínez M, Alonso S, Bargiela R, Coscolín C, Golyshin PN, Guallar V, Ferrer M.

Biochemistry. 2018 Apr 17;57(15):2245-2255. doi: 10.1021/acs.biochem.8b00274. Epub 2018 Mar 30.

9.

Draft Genome Sequence of Monaibacterium marinum C7T, Isolated from Seawater from the Menai Straits, Wales, United Kingdom.

Chernikova TN, Kyrpides N, Bargiela R, Woyke T, Shapiro N, Whitman WB, Golyshin PN.

Genome Announc. 2018 Feb 1;6(5). pii: e01444-17. doi: 10.1128/genomeA.01444-17.

10.

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".

Ferrer M, Sorokin DY, Wolf YI, Ciordia S, Mena MC, Bargiela R, Koonin EV, Makarova KS.

Genes (Basel). 2018 Jan 23;9(2). pii: E28. doi: 10.3390/genes9020028.

11.

Determinants and Prediction of Esterase Substrate Promiscuity Patterns.

Martínez-Martínez M, Coscolín C, Santiago G, Chow J, Stogios PJ, Bargiela R, Gertler C, Navarro-Fernández J, Bollinger A, Thies S, Méndez-García C, Popovic A, Brown G, Chernikova TN, García-Moyano A, Bjerga GEK, Pérez-García P, Hai T, Del Pozo MV, Stokke R, Steen IH, Cui H, Xu X, Nocek BP, Alcaide M, Distaso M, Mesa V, Peláez AI, Sánchez J, Buchholz PCF, Pleiss J, Fernández-Guerra A, Glöckner FO, Golyshina OV, Yakimov MM, Savchenko A, Jaeger KE, Yakunin AF, Streit WR, Golyshin PN, Guallar V, Ferrer M, The Inmare Consortium.

ACS Chem Biol. 2018 Jan 19;13(1):225-234. doi: 10.1021/acschembio.7b00996. Epub 2017 Dec 20.

PMID:
29182315
12.

Exploring the human microbiome from multiple perspectives: factors altering its composition and function.

Rojo D, Méndez-García C, Raczkowska BA, Bargiela R, Moya A, Ferrer M, Barbas C.

FEMS Microbiol Rev. 2017 Jul 1;41(4):453-478. doi: 10.1093/femsre/fuw046. Review.

13.

Degradation Network Reconstruction Guided by Metagenomic Data.

Bargiela R, Ferrer M.

Methods Mol Biol. 2017;1539:145-157.

PMID:
27900688
14.

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Bourguignon N, Bargiela R, Rojo D, Chernikova TN, de Rodas SA, García-Cantalejo J, Näther DJ, Golyshin PN, Barbas C, Ferrero M, Ferrer M.

World J Microbiol Biotechnol. 2016 Dec;32(12):201. Epub 2016 Oct 26.

PMID:
27785708
15.

Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals.

Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M.

EBioMedicine. 2016 Jun;8:203-216. doi: 10.1016/j.ebiom.2016.04.033. Epub 2016 Apr 27.

16.

Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data.

Bargiela R, Gertler C, Magagnini M, Mapelli F, Chen J, Daffonchio D, Golyshin PN, Ferrer M.

Front Microbiol. 2015 Nov 24;6:1270. doi: 10.3389/fmicb.2015.01270. eCollection 2015.

17.

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN.

Microb Biotechnol. 2016 Jan;9(1):22-34. doi: 10.1111/1751-7915.12309. Epub 2015 Aug 14. Review.

18.

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation.

Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN.

Proteomics. 2015 Oct;15(20):3508-20. doi: 10.1002/pmic.201400614. Epub 2015 Aug 27.

19.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.

Bargiela R, Mapelli F, Rojo D, Chouaia B, Tornés J, Borin S, Richter M, Del Pozo MV, Cappello S, Gertler C, Genovese M, Denaro R, Martínez-Martínez M, Fodelianakis S, Amer RA, Bigazzi D, Han X, Chen J, Chernikova TN, Golyshina OV, Mahjoubi M, Jaouanil A, Benzha F, Magagnini M, Hussein E, Al-Horani F, Cherif A, Blaghen M, Abdel-Fattah YR, Kalogerakis N, Barbas C, Malkawi HI, Golyshin PN, Yakimov MM, Daffonchio D, Ferrer M.

Sci Rep. 2015 Jun 29;5:11651. doi: 10.1038/srep11651.

20.

Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.

Microb Ecol. 2015 Nov;70(4):1034. doi: 10.1007/s00248-015-0631-6. No abstract available.

PMID:
26066513

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