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Items: 1 to 20 of 45

1.

Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016.

Zając M, Sztromwasser P, Bortolaia V, Leekitcharoenphon P, Cavaco LM, Ziȩtek-Barszcz A, Hendriksen RS, Wasyl D.

Front Microbiol. 2019 Aug 8;10:1753. doi: 10.3389/fmicb.2019.01753. eCollection 2019.

2.

Investing in Food Safety for Developing Countries: Opportunities and Challenges in Applying Whole-Genome Sequencing for Food Safety Management.

Apruzzese I, Song E, Bonah E, Sanidad VS, Leekitcharoenphon P, Medardus JJ, Abdalla N, Hosseini H, Takeuchi M.

Foodborne Pathog Dis. 2019 Jul;16(7):463-473. doi: 10.1089/fpd.2018.2599. Epub 2019 Jun 12.

3.

Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania.

Hounmanou YMG, Leekitcharoenphon P, Hendriksen RS, Dougnon TV, Mdegela RH, Olsen JE, Dalsgaard A.

Front Microbiol. 2019 Apr 30;10:901. doi: 10.3389/fmicb.2019.00901. eCollection 2019.

4.

IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin.

Valcek A, Roer L, Overballe-Petersen S, Hansen F, Bortolaia V, Leekitcharoenphon P, Korsgaard HB, Seyfarth AM, Hendriksen RS, Hasman H, Hammerum AM.

J Antimicrob Chemother. 2019 Aug 1;74(8):2171-2175. doi: 10.1093/jac/dkz199.

PMID:
31089683
5.

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium, Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM.

Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3.

6.

Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania.

Kumburu HH, Sonda T, van Zwetselaar M, Leekitcharoenphon P, Lukjancenko O, Mmbaga BT, Alifrangis M, Lund O, Aarestrup FM, Kibiki GS.

J Antimicrob Chemother. 2019 Jun 1;74(6):1484-1493. doi: 10.1093/jac/dkz055.

7.

Host Resistance, Genomics and Population Dynamics in a Salmonella Enteritidis and Phage System.

Holguín AV, Cárdenas P, Prada-Peñaranda C, Rabelo Leite L, Buitrago C, Clavijo V, Oliveira G, Leekitcharoenphon P, Møller Aarestrup F, Vives MJ.

Viruses. 2019 Feb 22;11(2). pii: E188. doi: 10.3390/v11020188.

8.

Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution.

Leekitcharoenphon P, Sørensen G, Löfström C, Battisti A, Szabo I, Wasyl D, Slowey R, Zhao S, Brisabois A, Kornschober C, Kärssin A, Szilárd J, Černý T, Svendsen CA, Pedersen K, Aarestrup FM, Hendriksen RS.

Front Microbiol. 2019 Feb 6;10:179. doi: 10.3389/fmicb.2019.00179. eCollection 2019.

9.

Improving hazard characterization in microbial risk assessment using next generation sequencing data and machine learning: Predicting clinical outcomes in shigatoxigenic Escherichia coli.

Njage PMK, Leekitcharoenphon P, Hald T.

Int J Food Microbiol. 2019 Mar 2;292:72-82. doi: 10.1016/j.ijfoodmicro.2018.11.016. Epub 2018 Dec 4.

10.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Typhimurium Sequence Type 313, Isolated from India.

Bangera SR, Umakanth S, Mukhopadhyay AK, Leekitcharoenphon P, Chowdhury G, Hendriksen RS, Ballal M.

Microbiol Resour Announc. 2018 Aug 30;7(8). pii: e00990-18. doi: 10.1128/MRA.00990-18. eCollection 2018 Aug.

11.

ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin.

Roer L, Overballe-Petersen S, Hansen F, Johannesen TB, Stegger M, Bortolaia V, Leekitcharoenphon P, Korsgaard HB, Seyfarth AM, Mossong J, Wattiau P, Boland C, Hansen DS, Hasman H, Hammerum AM, Hendriksen RS.

J Antimicrob Chemother. 2019 Mar 1;74(3):557-560. doi: 10.1093/jac/dky484.

PMID:
30496481
12.

Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next-Generation Sequencing Data.

Njage PMK, Henri C, Leekitcharoenphon P, Mistou MY, Hendriksen RS, Hald T.

Risk Anal. 2019 Jun;39(6):1397-1413. doi: 10.1111/risa.13239. Epub 2018 Nov 21.

PMID:
30462833
13.

Corrigendum: Colistin Resistance Mediated by mcr-1 in ESBL-Producing, Multidrug Resistant Salmonella Infantis in Broiler Chicken Industry, Italy (2016-2017).

Carfora V, Alba P, Leekitcharoenphon P, Ballarò D, Cordaro G, Di Matteo P, Donati V, Ianzano A, Iurescia M, Stravino F, Tagliaferri T, Battisti A, Franco A.

Front Microbiol. 2018 Oct 8;9:2395. doi: 10.3389/fmicb.2018.02395. eCollection 2018.

14.

Colistin Resistance Mediated by mcr-1 in ESBL-Producing, Multidrug Resistant Salmonella Infantis in Broiler Chicken Industry, Italy (2016-2017).

Carfora V, Alba P, Leekitcharoenphon P, Ballarò D, Cordaro G, Di Matteo P, Donati V, Ianzano A, Iurescia M, Stravino F, Tagliaferri T, Battisti A, Franco A.

Front Microbiol. 2018 Aug 17;9:1880. doi: 10.3389/fmicb.2018.01880. eCollection 2018. Erratum in: Front Microbiol. 2018 Oct 08;9:2395.

15.

Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring.

Alba P, Leekitcharoenphon P, Franco A, Feltrin F, Ianzano A, Caprioli A, Stravino F, Hendriksen RS, Bortolaia V, Battisti A.

Front Microbiol. 2018 Jun 12;9:1217. doi: 10.3389/fmicb.2018.01217. eCollection 2018.

16.

Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing.

Kumburu HH, Sonda T, Leekitcharoenphon P, van Zwetselaar M, Lukjancenko O, Alifrangis M, Lund O, Mmbaga BT, Kibiki G, Aarestrup FM.

Biomed Res Int. 2018 Jan 2;2018:2087693. doi: 10.1155/2018/2087693. eCollection 2018.

17.

Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes.

Rebelo AR, Bortolaia V, Kjeldgaard JS, Pedersen SK, Leekitcharoenphon P, Hansen IM, Guerra B, Malorny B, Borowiak M, Hammerl JA, Battisti A, Franco A, Alba P, Perrin-Guyomard A, Granier SA, De Frutos Escobar C, Malhotra-Kumar S, Villa L, Carattoli A, Hendriksen RS.

Euro Surveill. 2018 Feb;23(6). doi: 10.2807/1560-7917.ES.2018.23.6.17-00672. Erratum in: Euro Surveill. 2018 Feb;23(7):.

18.

Epidemiology of Danish Aeromonas salmonicida subsp. salmonicida in Fish Farms Using Whole Genome Sequencing.

Bartkova S, Leekitcharoenphon P, Aarestrup FM, Dalsgaard I.

Front Microbiol. 2017 Dec 5;8:2411. doi: 10.3389/fmicb.2017.02411. eCollection 2017.

19.

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

Henri C, Leekitcharoenphon P, Carleton HA, Radomski N, Kaas RS, Mariet JF, Felten A, Aarestrup FM, Gerner Smidt P, Roussel S, Guillier L, Mistou MY, Hendriksen RS.

Front Microbiol. 2017 Nov 29;8:2351. doi: 10.3389/fmicb.2017.02351. eCollection 2017.

20.

The invasome of Salmonella Dublin as revealed by whole genome sequencing.

Mohammed M, Le Hello S, Leekitcharoenphon P, Hendriksen R.

BMC Infect Dis. 2017 Aug 4;17(1):544. doi: 10.1186/s12879-017-2628-x.

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