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Items: 1 to 20 of 24

1.

A Bioinformatics View of Glycan⁻Virus Interactions.

Le Mercier P, Mariethoz J, Lascano-Maillard J, Bonnardel F, Imberty A, Ricard-Blum S, Lisacek F.

Viruses. 2019 Apr 23;11(4). pii: E374. doi: 10.3390/v11040374. Review.

2.

Bipartite promoters and RNA editing of paramyxoviruses and filoviruses.

le Mercier P, Kolakofsky D.

RNA. 2019 Mar;25(3):279-285. doi: 10.1261/rna.068825.118. Epub 2018 Dec 26. Review.

PMID:
30587495
3.

A new era of virus bioinformatics.

Ibrahim B, McMahon DP, Hufsky F, Beer M, Deng L, Mercier PL, Palmarini M, Thiel V, Marz M.

Virus Res. 2018 Jun 2;251:86-90. doi: 10.1016/j.virusres.2018.05.009. Epub 2018 May 8. Review.

PMID:
29751021
4.

Virologists-Heroes need weapons.

Hufsky F, Ibrahim B, Beer M, Deng L, Mercier PL, McMahon DP, Palmarini M, Thiel V, Marz M.

PLoS Pathog. 2018 Feb 8;14(2):e1006771. doi: 10.1371/journal.ppat.1006771. eCollection 2018 Feb. No abstract available.

5.

Bacterial Virus Ontology; Coordinating across Databases.

Hulo C, Masson P, Toussaint A, Osumi-Sutherland D, de Castro E, Auchincloss AH, Poux S, Bougueleret L, Xenarios I, Le Mercier P.

Viruses. 2017 May 23;9(6). pii: E126. doi: 10.3390/v9060126.

6.

The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection.

Hulo C, Masson P, de Castro E, Auchincloss AH, Foulger R, Poux S, Lomax J, Bougueleret L, Xenarios I, Le Mercier P.

PLoS One. 2017 Feb 16;12(2):e0171746. doi: 10.1371/journal.pone.0171746. eCollection 2017.

7.

Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.

Druce M, Hulo C, Masson P, Sommer P, Xenarios I, Le Mercier P, De Oliveira T.

Database (Oxford). 2016 Apr 17;2016. pii: baw045. doi: 10.1093/database/baw045. Print 2016.

8.

A structured annotation frame for the transposable phages: a new proposed family "Saltoviridae" within the Caudovirales.

Hulo C, Masson P, Le Mercier P, Toussaint A.

Virology. 2015 Mar;477:155-163. doi: 10.1016/j.virol.2014.10.009. Epub 2014 Dec 12.

9.

An integrated ontology resource to explore and study host-virus relationships.

Masson P, Hulo C, de Castro E, Foulger R, Poux S, Bridge A, Lomax J, Bougueleret L, Xenarios I, Le Mercier P.

PLoS One. 2014 Sep 18;9(9):e108075. doi: 10.1371/journal.pone.0108075. eCollection 2014.

10.

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Stockinger H, Altenhoff AM, Arnold K, Bairoch A, Bastian F, Bergmann S, Bougueleret L, Bucher P, Delorenzi M, Lane L, Le Mercier P, Lisacek F, Michielin O, Palagi PM, Rougemont J, Schwede T, von Mering C, van Nimwegen E, Walther D, Xenarios I, Zavolan M, Zdobnov EM, Zoete V, Appel RD.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W436-41. doi: 10.1093/nar/gku380. Epub 2014 May 3.

11.

The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses.

Claes F, Kuznetsov D, Liechti R, Von Dobschuetz S, Truong BD, Gleizes A, Conversa D, Colonna A, Demaio E, Ramazzotto S, Larfaoui F, Pinto J, Le Mercier P, Xenarios I, Dauphin G.

Database (Oxford). 2014 Mar 6;2014:bau008. doi: 10.1093/database/bau008. Print 2014.

12.

ViralZone: recent updates to the virus knowledge resource.

Masson P, Hulo C, De Castro E, Bitter H, Gruenbaum L, Essioux L, Bougueleret L, Xenarios I, Le Mercier P.

Nucleic Acids Res. 2013 Jan;41(Database issue):D579-83. doi: 10.1093/nar/gks1220. Epub 2012 Nov 28.

13.

Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop.

Brister JR, Bao Y, Kuiken C, Lefkowitz EJ, Le Mercier P, Leplae R, Madupu R, Scheuermann RH, Schobel S, Seto D, Shrivastava S, Sterk P, Zeng Q, Klimke W, Tatusova T.

Viruses. 2010 Oct;2(10):2258-68. doi: 10.3390/v2102258. Epub 2010 Oct 13.

14.

Human parainfluenza virus type 2 L protein regions required for interaction with other viral proteins and mRNA capping.

Nishio M, Tsurudome M, Garcin D, Komada H, Ito M, Le Mercier P, Nosaka T, Kolakofsky D.

J Virol. 2011 Jan;85(2):725-32. doi: 10.1128/JVI.01226-10. Epub 2010 Nov 10.

15.

ViralZone: a knowledge resource to understand virus diversity.

Hulo C, de Castro E, Masson P, Bougueleret L, Bairoch A, Xenarios I, Le Mercier P.

Nucleic Acids Res. 2011 Jan;39(Database issue):D576-82. doi: 10.1093/nar/gkq901. Epub 2010 Oct 14.

16.

OpenFluDB, a database for human and animal influenza virus.

Liechti R, Gleizes A, Kuznetsov D, Bougueleret L, Le Mercier P, Bairoch A, Xenarios I.

Database (Oxford). 2010 Jul 6;2010:baq004. doi: 10.1093/database/baq004.

17.

Sendai virus RNA polymerase scanning for mRNA start sites at gene junctions.

Plattet P, Strahle L, le Mercier P, Hausmann S, Garcin D, Kolakofsky D.

Virology. 2007 Jun 5;362(2):411-20. Epub 2007 Feb 14.

18.

euHCVdb: the European hepatitis C virus database.

Combet C, Garnier N, Charavay C, Grando D, Crisan D, Lopez J, Dehne-Garcia A, Geourjon C, Bettler E, Hulo C, Le Mercier P, Bartenschlager R, Diepolder H, Moradpour D, Pawlotsky JM, Rice CM, Trépo C, Penin F, Deléage G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D363-6. Epub 2006 Nov 16.

19.

Viral DNA polymerase scanning and the gymnastics of Sendai virus RNA synthesis.

Kolakofsky D, Le Mercier P, Iseni F, Garcin D.

Virology. 2004 Jan 20;318(2):463-73. Review.

PMID:
15015496
20.

Competition between the Sendai virus N mRNA start site and the genome 3'-end promoter for viral RNA polymerase.

Le Mercier P, Garcin D, Garcia E, Kolakofsky D.

J Virol. 2003 Sep;77(17):9147-55.

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