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Items: 1 to 20 of 25

1.

DNA assembly with error correction on a droplet digital microfluidics platform.

Khilko Y, Weyman PD, Glass JI, Adams MD, McNeil MA, Griffin PB.

BMC Biotechnol. 2018 Jun 1;18(1):37. doi: 10.1186/s12896-018-0439-9.

2.

Tuning Gene Activity by Inducible and Targeted Regulation of Gene Expression in Minimal Bacterial Cells.

Mariscal AM, Kakizawa S, Hsu JY, Tanaka K, González-González L, Broto A, Querol E, Lluch-Senar M, Piñero-Lambea C, Sun L, Weyman PD, Wise KS, Merryman C, Tse G, Moore AJ, Hutchison CA 3rd, Smith HO, Tomita M, Venter JC, Glass JI, Piñol J, Suzuki Y.

ACS Synth Biol. 2018 Jun 15;7(6):1538-1552. doi: 10.1021/acssynbio.8b00028. Epub 2018 May 22.

3.

Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont.

Warshan D, Liaimer A, Pederson E, Kim SY, Shapiro N, Woyke T, Altermark B, Pawlowski K, Weyman PD, Dupont CL, Rasmussen U.

Mol Biol Evol. 2018 May 1;35(5):1160-1175. doi: 10.1093/molbev/msy029.

4.

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis.

Warshan D, Espinoza JL, Stuart RK, Richter RA, Kim SY, Shapiro N, Woyke T, C Kyrpides N, Barry K, Singan V, Lindquist E, Ansong C, Purvine SO, M Brewer H, Weyman PD, Dupont CL, Rasmussen U.

ISME J. 2017 Dec;11(12):2821-2833. doi: 10.1038/ismej.2017.134. Epub 2017 Aug 11.

5.

Diatom centromeres suggest a mechanism for nuclear DNA acquisition.

Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA Jr, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD.

Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):E6015-E6024. doi: 10.1073/pnas.1700764114. Epub 2017 Jul 3.

6.

Facile Site-Directed Mutagenesis of Large Constructs Using Gibson Isothermal DNA Assembly.

Yonemoto IT, Weyman PD.

Methods Mol Biol. 2017;1498:359-366.

PMID:
27709588
7.

Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods.

Diner RE, Bielinski VA, Dupont CL, Allen AE, Weyman PD.

Front Bioeng Biotechnol. 2016 Aug 8;4:65. doi: 10.3389/fbioe.2016.00065. eCollection 2016.

8.

Designer diatom episomes delivered by bacterial conjugation.

Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD.

Nat Commun. 2015 Apr 21;6:6925. doi: 10.1038/ncomms7925.

9.

Designed surface residue substitutions in [NiFe] hydrogenase that improve electron transfer characteristics.

Yonemoto IT, Smith HO, Weyman PD.

Int J Mol Sci. 2015 Jan 16;16(1):2020-33. doi: 10.3390/ijms16012020.

10.

Strategies for cloning and manipulating natural and synthetic chromosomes.

Karas BJ, Suzuki Y, Weyman PD.

Chromosome Res. 2015 Feb;23(1):57-68. doi: 10.1007/s10577-014-9455-3. Review.

PMID:
25596826
11.

Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis.

Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL.

Plant Biotechnol J. 2015 May;13(4):460-70. doi: 10.1111/pbi.12254. Epub 2014 Oct 10.

12.

A broad survey reveals substitution tolerance of residues ligating FeS clusters in [NiFe] hydrogenase.

Yonemoto IT, Clarkson BR, Smith HO, Weyman PD.

BMC Biochem. 2014 Jun 17;15:10. doi: 10.1186/1471-2091-15-10.

13.

Transferring whole genomes from bacteria to yeast spheroplasts using entire bacterial cells to reduce DNA shearing.

Karas BJ, Jablanovic J, Irvine E, Sun L, Ma L, Weyman PD, Gibson DG, Glass JI, Venter JC, Hutchison CA 3rd, Smith HO, Suzuki Y.

Nat Protoc. 2014 Apr;9(4):743-50. doi: 10.1038/nprot.2014.045. Epub 2014 Mar 6.

PMID:
24603933
14.

Assembly of eukaryotic algal chromosomes in yeast.

Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Weyman PD.

J Biol Eng. 2013 Dec 10;7(1):30. doi: 10.1186/1754-1611-7-30.

15.

Circadian yin-yang regulation and its manipulation to globally reprogram gene expression.

Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH.

Curr Biol. 2013 Dec 2;23(23):2365-74. doi: 10.1016/j.cub.2013.10.011. Epub 2013 Nov 7.

16.

Dual organism design cycle reveals small subunit substitutions that improve [NiFe] hydrogenase hydrogen evolution.

Yonemoto IT, Matteri CW, Nguyen TA, Smith HO, Weyman PD.

J Biol Eng. 2013 Jul 2;7(1):17. doi: 10.1186/1754-1611-7-17.

17.

Assembly of large, high G+C bacterial DNA fragments in yeast.

Noskov VN, Karas BJ, Young L, Chuang RY, Gibson DG, Lin YC, Stam J, Yonemoto IT, Suzuki Y, Andrews-Pfannkoch C, Glass JI, Smith HO, Hutchison CA 3rd, Venter JC, Weyman PD.

ACS Synth Biol. 2012 Jul 20;1(7):267-73. doi: 10.1021/sb3000194. Epub 2012 May 21.

PMID:
23651249
18.

Direct transfer of whole genomes from bacteria to yeast.

Karas BJ, Jablanovic J, Sun L, Ma L, Goldgof GM, Stam J, Ramon A, Manary MJ, Winzeler EA, Venter JC, Weyman PD, Gibson DG, Glass JI, Hutchison CA 3rd, Smith HO, Suzuki Y.

Nat Methods. 2013 May;10(5):410-2. doi: 10.1038/nmeth.2433. Epub 2013 Mar 31.

19.

Genetic analysis of the Alteromonas macleodii [NiFe]-hydrogenase.

Weyman PD, Smith HO, Xu Q.

FEMS Microbiol Lett. 2011 Sep;322(2):180-7. doi: 10.1111/j.1574-6968.2011.02348.x. Epub 2011 Jul 19.

20.

Heterologous expression of Alteromonas macleodii and Thiocapsa roseopersicina [NiFe] hydrogenases in Synechococcus elongatus.

Weyman PD, Vargas WA, Tong Y, Yu J, Maness PC, Smith HO, Xu Q.

PLoS One. 2011;6(5):e20126. doi: 10.1371/journal.pone.0020126. Epub 2011 May 26.

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