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Items: 1 to 20 of 79

1.

Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research.

Dobbins NJ, Spital CH, Black RA, Morrison JM, de Veer B, Zampino E, Harrington RD, Britt BD, Stephens KA, Wilcox AB, Tarczy-Hornoch P, Mooney SD.

J Am Med Inform Assoc. 2020 Jan 1;27(1):109-118. doi: 10.1093/jamia/ocz165.

2.

Personalized Medicine Implementation with Non-traditional Data Sources: A Conceptual Framework and Survey of the Literature.

Taylor CO, Tarczy-Hornoch P.

Yearb Med Inform. 2019 Aug;28(1):181-189. doi: 10.1055/s-0039-1677916. Epub 2019 Aug 16. Review.

3.

Clinical exome sequencing vs. usual care for hereditary colorectal cancer diagnosis: A pilot comparative effectiveness study.

Niu X, Amendola LM, Hart R, Bennette CS, Heagerty P, Horike-Pyne M, Trinidad SB, Rosenthal EA, Comstock B, Nefcy C, Hisama FM, Bennett RL, Grady WM, Gallego CJ, Tarczy-Hornoch P, Fullerton SM, Burke W, Regier DA, Dorschner MO, Shirts BH, Robertson PD, Nickerson DA, Patrick DL, Jarvik GP, Veenstra DL.

Contemp Clin Trials. 2019 Sep;84:105820. doi: 10.1016/j.cct.2019.105820. Epub 2019 Aug 7.

PMID:
31400517
4.

The Feelings About genomiC Testing Results (FACToR) Questionnaire: Development and Preliminary Validation.

Li M, Bennette CS, Amendola LM, Ragan Hart M, Heagerty P, Comstock B, Tarczy-Hornoch P, Fullerton SM, Regier DA, Burke W, Trinidad SB, Jarvik GP, Veenstra DL, Patrick DL.

J Genet Couns. 2019 Apr;28(2):477-490. doi: 10.1007/s10897-018-0286-9. Epub 2018 Dec 14.

PMID:
30964586
5.

Sustainability considerations for clinical and translational research informatics infrastructure.

Obeid JS, Tarczy-Hornoch P, Harris PA, Barnett WK, Anderson NR, Embi PJ, Hogan WR, Bell DS, McIntosh LD, Knosp B, Tachinardi U, Cimino JJ, Wehbe FH.

J Clin Transl Sci. 2018 Oct;2(5):267-275. doi: 10.1017/cts.2018.332. Epub 2018 Dec 5.

6.

Identifying Patients Who Are Likely to Receive Most of Their Care From a Specific Health Care System: Demonstration via Secondary Analysis.

Luo G, Tarczy-Hornoch P, Wilcox AB, Lee ES.

JMIR Med Inform. 2018 Nov 5;6(4):e12241. doi: 10.2196/12241.

7.

The Feelings About genomiC Testing Results (FACToR) Questionnaire: Development and Preliminary Validation.

Li M, Bennette CS, Amendola LM, Ragan Hart M, Heagerty P, Comstock B, Tarczy-Hornoch P, Fullerton SM, Regier DA, Burke W, Trinidad SB, Jarvik GP, Veenstra DL, Patrick DL.

J Genet Couns. 2018 Sep 1. doi: 10.1007/s10897-018-0286-9. [Epub ahead of print]

PMID:
30173308
8.

Automating Electronic Clinical Data Capture for Quality Improvement and Research: The CERTAIN Validation Project of Real World Evidence.

Devine EB, Van Eaton E, Zadworny ME, Symons R, Devlin A, Yanez D, Yetisgen M, Keyloun KR, Capurro D, Alfonso-Cristancho R, Flum DR, Tarczy-Hornoch P.

EGEMS (Wash DC). 2018 May 22;6(1):8. doi: 10.5334/egems.211.

9.

Automating Construction of Machine Learning Models With Clinical Big Data: Proposal Rationale and Methods.

Luo G, Stone BL, Johnson MD, Tarczy-Hornoch P, Wilcox AB, Mooney SD, Sheng X, Haug PJ, Nkoy FL.

JMIR Res Protoc. 2017 Aug 29;6(8):e175. doi: 10.2196/resprot.7757.

10.

Design Recommendations for Pharmacogenomics Clinical Decision Support Systems.

Khelifi M, Tarczy-Hornoch P, Devine EB, Pratt W.

AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:237-246. eCollection 2017.

11.

A Knowledge-based System for Intelligent Support in Pharmacogenomics Evidence Assessment: Ontology-driven Evidence Representation and Retrieval.

Lee CJ, Devine B, Tarczy-Hornoch P.

AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:175-184. eCollection 2017.

12.

Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.

Rasmussen LV, Overby CL, Connolly J, Chute CG, Denny JC, Freimuth R, Hartzler AL, Holm IA, Manzi S, Pathak J, Peissig PL, Smith M, Williams MS, Shirts BH, Stoffel EM, Tarczy-Hornoch P, Rohrer Vitek CR, Wolf WA, Starren J.

Appl Clin Inform. 2016 Sep 21;7(3):870-82. doi: 10.4338/ACI-2016-04-RA-0060.

13.

Modeling the costs of clinical decision support for genomic precision medicine.

Mathias PC, Tarczy-Hornoch P, Shirts BH.

AMIA Jt Summits Transl Sci Proc. 2016 Jul 20;2016:60-4. eCollection 2016.

14.

Clinical Sequencing Exploratory Research Consortium: Accelerating Evidence-Based Practice of Genomic Medicine.

Green RC, Goddard KA, Jarvik GP, Amendola LM, Appelbaum PS, Berg JS, Bernhardt BA, Biesecker LG, Biswas S, Blout CL, Bowling KM, Brothers KB, Burke W, Caga-Anan CF, Chinnaiyan AM, Chung WK, Clayton EW, Cooper GM, East K, Evans JP, Fullerton SM, Garraway LA, Garrett JR, Gray SW, Henderson GE, Hindorff LA, Holm IA, Lewis MH, Hutter CM, Janne PA, Joffe S, Kaufman D, Knoppers BM, Koenig BA, Krantz ID, Manolio TA, McCullough L, McEwen J, McGuire A, Muzny D, Myers RM, Nickerson DA, Ou J, Parsons DW, Petersen GM, Plon SE, Rehm HL, Roberts JS, Robinson D, Salama JS, Scollon S, Sharp RR, Shirts B, Spinner NB, Tabor HK, Tarczy-Hornoch P, Veenstra DL, Wagle N, Weck K, Wilfond BS, Wilhelmsen K, Wolf SM, Wynn J, Yu JH; CSER Consortium.

Am J Hum Genet. 2016 Jul 7;99(1):246. doi: 10.1016/j.ajhg.2016.06.002. No abstract available.

15.

Clinical Sequencing Exploratory Research Consortium: Accelerating Evidence-Based Practice of Genomic Medicine.

Green RC, Goddard KAB, Jarvik GP, Amendola LM, Appelbaum PS, Berg JS, Bernhardt BA, Biesecker LG, Biswas S, Blout CL, Bowling KM, Brothers KB, Burke W, Caga-Anan CF, Chinnaiyan AM, Chung WK, Clayton EW, Cooper GM, East K, Evans JP, Fullerton SM, Garraway LA, Garrett JR, Gray SW, Henderson GE, Hindorff LA, Holm IA, Lewis MH, Hutter CM, Janne PA, Joffe S, Kaufman D, Knoppers BM, Koenig BA, Krantz ID, Manolio TA, McCullough L, McEwen J, McGuire A, Muzny D, Myers RM, Nickerson DA, Ou J, Parsons DW, Petersen GM, Plon SE, Rehm HL, Roberts JS, Robinson D, Salama JS, Scollon S, Sharp RR, Shirts B, Spinner NB, Tabor HK, Tarczy-Hornoch P, Veenstra DL, Wagle N, Weck K, Wilfond BS, Wilhelmsen K, Wolf SM, Wynn J, Yu JH; CSER Consortium.

Am J Hum Genet. 2016 Jun 2;98(6):1051-1066. doi: 10.1016/j.ajhg.2016.04.011. Epub 2016 May 12. Erratum in: Am J Hum Genet. 2016 Jul 7;99(1):246.

16.

Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting.

Wiley LK, Tarczy-Hornoch P, Denny JC, Freimuth RR, Overby CL, Shah N, Martin RD, Sarkar IN.

J Am Med Inform Assoc. 2016 Mar;23(2):413-9. doi: 10.1093/jamia/ocv111. Epub 2016 Feb 5.

17.

Physician perspectives of CYP2C19 and clopidogrel drug-gene interaction active clinical decision support alerts.

Nishimura AA, Shirts BH, Salama J, Smith JW, Devine B, Tarczy-Hornoch P.

Int J Med Inform. 2016 Feb;86:117-25. doi: 10.1016/j.ijmedinf.2015.11.004. Epub 2015 Nov 11.

18.

Characterizing Secondary Use of Clinical Data.

Lee ES, Black RA, Harrington RD, Tarczy-Hornoch P, Facmi.

AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:92-6. eCollection 2015.

19.

Pragmatic and Ethical Challenges of Incorporating the Genome into the Electronic Medical Record.

Nishimura AA, Tarczy-Hornoch P, Shirts BH.

Curr Genet Med Rep. 2014 Dec 1;2(4):201-211.

20.

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

Shirts BH, Salama JS, Aronson SJ, Chung WK, Gray SW, Hindorff LA, Jarvik GP, Plon SE, Stoffel EM, Tarczy-Hornoch PZ, Van Allen EM, Weck KE, Chute CG, Freimuth RR, Grundmeier RW, Hartzler AL, Li R, Peissig PL, Peterson JF, Rasmussen LV, Starren JB, Williams MS, Overby CL.

J Am Med Inform Assoc. 2015 Nov;22(6):1231-42. doi: 10.1093/jamia/ocv065. Epub 2015 Jul 3.

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