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Items: 1 to 20 of 35

1.

Lysosomal Storage and Albinism Due to Effects of a De Novo CLCN7 Variant on Lysosomal Acidification.

Nicoli ER, Weston MR, Hackbarth M, Becerril A, Larson A, Zein WM, Baker PR 2nd, Burke JD, Dorward H, Davids M, Huang Y, Adams DR, Zerfas PM, Chen D, Markello TC, Toro C, Wood T, Elliott G, Vu M; Undiagnosed Diseases Network, Zheng W, Garrett LJ, Tifft CJ, Gahl WA, Day-Salvatore DL, Mindell JA, Malicdan MCV.

Am J Hum Genet. 2019 Jun 6;104(6):1127-1138. doi: 10.1016/j.ajhg.2019.04.008. Epub 2019 May 30.

2.

Proteomics Standards Initiative Extended FASTA Format.

Binz PA, Shofstahl J, Vizcaíno JA, Barsnes H, Chalkley RJ, Menschaert G, Alpi E, Clauser K, Eng JK, Lane L, Seymour SL, Sánchez LFH, Mayer G, Eisenacher M, Perez-Riverol Y, Kapp EA, Mendoza L, Baker PR, Collins A, Van Den Bossche T, Deutsch EW.

J Proteome Res. 2019 Jun 7;18(6):2686-2692. doi: 10.1021/acs.jproteome.9b00064. Epub 2019 May 23.

3.

Switching obese mothers to a healthy diet improves fetal hypoxemia, hepatic metabolites, and lipotoxicity in non-human primates.

Wesolowski SR, Mulligan CM, Janssen RC, Baker PR 2nd, Bergman BC, D'Alessandro A, Nemkov T, Maclean KN, Jiang H, Dean TA, Takahashi DL, Kievit P, McCurdy CE, Aagaard KM, Friedman JE.

Mol Metab. 2018 Dec;18:25-41. doi: 10.1016/j.molmet.2018.09.008. Epub 2018 Sep 28.

4.

Preconception Micronutrient Supplementation Reduced Circulating Branched Chain Amino Acids at 12 Weeks Gestation in an Open Trial of Guatemalan Women Who Are Overweight or Obese.

Borengasser SJ, Baker PR 2nd, Kerns ME, Miller LV, Palacios AP, Kemp JF, Westcott JE, Morrison SD, Hernandez TL, Garces A, Figueroa L, Friedman JE, Hambidge KM, Krebs NF.

Nutrients. 2018 Sep 11;10(9). pii: E1282. doi: 10.3390/nu10091282.

5.

Mitochondrial role in the neonatal predisposition to developing nonalcoholic fatty liver disease.

Baker PR 2nd, Friedman JE.

J Clin Invest. 2018 Aug 31;128(9):3692-3703. doi: 10.1172/JCI120846. Epub 2018 Aug 31. Review.

6.

TRAPPC11 and GOSR2 mutations associate with hypoglycosylation of α-dystroglycan and muscular dystrophy.

Larson AA, Baker PR 2nd, Milev MP, Press CA, Sokol RJ, Cox MO, Lekostaj JK, Stence AA, Bossler AD, Mueller JM, Prematilake K, Tadjo TF, Williams CA, Sacher M, Moore SA.

Skelet Muscle. 2018 May 31;8(1):17. doi: 10.1186/s13395-018-0163-0.

7.

In memoriam.

Van Hove JLK, Thomas JA, Baker PR 2nd, Larson AA.

J Inherit Metab Dis. 2018 May 7. doi: 10.1007/s10545-018-0191-2. [Epub ahead of print] No abstract available.

PMID:
29736632
8.

Altered gene expression and metabolism in fetal umbilical cord mesenchymal stem cells correspond with differences in 5-month-old infant adiposity gain.

Baker PR 2nd, Patinkin ZW, Shapiro ALB, de la Houssaye BA, Janssen RC, Vanderlinden LA, Dabelea D, Friedman JE.

Sci Rep. 2017 Dec 22;7(1):18095. doi: 10.1038/s41598-017-17588-4.

9.

Maternal obesity and increased neonatal adiposity correspond with altered infant mesenchymal stem cell metabolism.

Baker PR 2nd, Patinkin Z, Shapiro AL, De La Houssaye BA, Woontner M, Boyle KE, Vanderlinden L, Dabelea D, Friedman JE.

JCI Insight. 2017 Nov 2;2(21). pii: 94200. doi: 10.1172/jci.insight.94200.

10.

Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.

Chalkley RJ, Baker PR.

Anal Bioanal Chem. 2017 Jan;409(2):571-577. doi: 10.1007/s00216-016-9981-2. Epub 2016 Oct 8.

PMID:
27722944
11.

Rapid resolution of infantile lipemia retinalis following exchange transfusion.

Capitena CE, Wagoner HJ, Ruzas CM, Bennett TD, Baker PR 2nd, Jung JL, Weisfeld-Adams JD.

J Inherit Metab Dis. 2016 Nov;39(6):889-890. Epub 2016 Aug 12. No abstract available.

PMID:
27518769
12.

Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

Shah AK, Lê Cao KA, Choi E, Chen D, Gautier B, Nancarrow D, Whiteman DC, Baker PR, Clauser KR, Chalkley RJ, Saunders NA, Barbour AP, Joshi V, Hill MM.

Data Brief. 2016 Apr 1;7:1058-62. doi: 10.1016/j.dib.2016.03.081. eCollection 2016 Jun.

13.

Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome.

Lemas DJ, Young BE, Baker PR 2nd, Tomczik AC, Soderborg TK, Hernandez TL, de la Houssaye BA, Robertson CE, Rudolph MC, Ir D, Patinkin ZW, Krebs NF, Santorico SA, Weir T, Barbour LA, Frank DN, Friedman JE.

Am J Clin Nutr. 2016 May;103(5):1291-300. doi: 10.3945/ajcn.115.126375.

14.

Mesenchymal Stem Cells From Infants Born to Obese Mothers Exhibit Greater Potential for Adipogenesis: The Healthy Start BabyBUMP Project.

Boyle KE, Patinkin ZW, Shapiro AL, Baker PR 2nd, Dabelea D, Friedman JE.

Diabetes. 2016 Mar;65(3):647-59. doi: 10.2337/db15-0849. Epub 2015 Dec 2.

15.

Metabolomic analysis reveals altered skeletal muscle amino acid and fatty acid handling in obese humans.

Baker PR 2nd, Boyle KE, Koves TR, Ilkayeva OR, Muoio DM, Houmard JA, Friedman JE.

Obesity (Silver Spring). 2015 May;23(5):981-988. doi: 10.1002/oby.21046. Epub 2015 Apr 10.

16.

Co-occurrence of the Poland sequence in a patient with the cobalamin C defect: more than just a coincidence?

Weisfeld-Adams JD, Baker PR.

J Inherit Metab Dis. 2015 Mar;38(2):365-6. doi: 10.1007/s10545-014-9791-7. Epub 2014 Nov 12. No abstract available.

PMID:
25388550
17.

MS-viewer: a web-based spectral viewer for proteomics results.

Baker PR, Chalkley RJ.

Mol Cell Proteomics. 2014 May;13(5):1392-6. doi: 10.1074/mcp.O113.037200. Epub 2014 Mar 3.

18.

Matching cross-linked peptide spectra: only as good as the worse identification.

Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ.

Mol Cell Proteomics. 2014 Feb;13(2):420-34. doi: 10.1074/mcp.M113.034009. Epub 2013 Dec 12.

19.

Variant non ketotic hyperglycinemia is caused by mutations in LIAS, BOLA3 and the novel gene GLRX5.

Baker PR 2nd, Friederich MW, Swanson MA, Shaikh T, Bhattacharya K, Scharer GH, Aicher J, Creadon-Swindell G, Geiger E, MacLean KN, Lee WT, Deshpande C, Freckmann ML, Shih LY, Wasserstein M, Rasmussen MB, Lund AM, Procopis P, Cameron JM, Robinson BH, Brown GK, Brown RM, Compton AG, Dieckmann CL, Collard R, Coughlin CR 2nd, Spector E, Wempe MF, Van Hove JL.

Brain. 2014 Feb;137(Pt 2):366-79. doi: 10.1093/brain/awt328. Epub 2013 Dec 11.

20.

Current challenges in software solutions for mass spectrometry-based quantitative proteomics.

Cappadona S, Baker PR, Cutillas PR, Heck AJ, van Breukelen B.

Amino Acids. 2012 Sep;43(3):1087-108. doi: 10.1007/s00726-012-1289-8. Epub 2012 Jul 22. Review.

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