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Items: 1 to 20 of 53

1.

Correction to: Mutations in AraR leading to constitutive expression of arabinolytic genes in Aspergillus niger under derepressing conditions.

Reijngoud J, Deseke M, Halbesma ETM, Alazi E, Arentshorst M, Punt PJ, Ram AFJ.

Appl Microbiol Biotechnol. 2019 Jun;103(12):5063. doi: 10.1007/s00253-019-09853-5.

PMID:
31053914
2.

Mutations in AraR leading to constitutive expression of arabinolytic genes in Aspergillus niger under derepressing conditions [corrected].

Reijngoud J, Deseke M, Halbesma ETM, Alazi E, Arentshorst M, Punt PJ, Ram AFJ.

Appl Microbiol Biotechnol. 2019 May;103(10):4125-4136. doi: 10.1007/s00253-019-09777-0. Epub 2019 Apr 8. Erratum in: Appl Microbiol Biotechnol. 2019 May 3;:.

3.

The interplay between transport and metabolism in fungal itaconic acid production.

Hosseinpour Tehrani H, Geiser E, Engel M, Hartmann SK, Hossain AH, Punt PJ, Blank LM, Wierckx N.

Fungal Genet Biol. 2019 Apr;125:45-52. doi: 10.1016/j.fgb.2019.01.011. Epub 2019 Jan 28.

PMID:
30703558
4.

Itaconic acid degradation in Aspergillus niger: the role of unexpected bioconversion pathways.

Hossain AH, Ter Beek A, Punt PJ.

Fungal Biol Biotechnol. 2019 Jan 4;6:1. doi: 10.1186/s40694-018-0062-5. eCollection 2019.

5.

The fungal composition of natural biofinishes on oil-treated wood.

van Nieuwenhuijzen EJ, Houbraken JAMP, Punt PJ, Roeselers G, Adan OCG, Samson RA.

Fungal Biol Biotechnol. 2017 Jan 26;4:2. doi: 10.1186/s40694-017-0030-5. eCollection 2017.

6.

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing.

Liem M, Jansen HJ, Dirks RP, Henkel CV, van Heusden GPH, Lemmers RJLF, Omer T, Shao S, Punt PJ, Spaink HP.

Version 2. F1000Res. 2017 May 3 [revised 2018 Jan 1];6:618. doi: 10.12688/f1000research.11146.2. eCollection 2017.

7.

The discovery of novel LPMO families with a new Hidden Markov model.

Voshol GP, Vijgenboom E, Punt PJ.

BMC Res Notes. 2017 Feb 21;10(1):105. doi: 10.1186/s13104-017-2429-8.

8.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.

9.

An Evolutionarily Conserved Transcriptional Activator-Repressor Module Controls Expression of Genes for D-Galacturonic Acid Utilization in Aspergillus niger.

Niu J, Alazi E, Reid ID, Arentshorst M, Punt PJ, Visser J, Tsang A, Ram AF.

Genetics. 2017 Jan;205(1):169-183. doi: 10.1534/genetics.116.194050. Epub 2016 Nov 9.

10.

Rewiring a secondary metabolite pathway towards itaconic acid production in Aspergillus niger.

Hossain AH, Li A, Brickwedde A, Wilms L, Caspers M, Overkamp K, Punt PJ.

Microb Cell Fact. 2016 Jul 28;15(1):130. doi: 10.1186/s12934-016-0527-2.

11.

The unconventional secretion of PepN is independent of a functional autophagy machinery in the filamentous fungus Aspergillus niger.

Burggraaf AM, Punt PJ, Ram AF.

FEMS Microbiol Lett. 2016 Aug;363(15). pii: fnw152. doi: 10.1093/femsle/fnw152. Epub 2016 Jun 8.

PMID:
27284019
12.

Characterizing MttA as a mitochondrial cis-aconitic acid transporter by metabolic engineering.

Steiger MG, Punt PJ, Ram AFJ, Mattanovich D, Sauer M.

Metab Eng. 2016 May;35:95-104. doi: 10.1016/j.ymben.2016.02.003. Epub 2016 Feb 10.

PMID:
26875555
13.

Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some Secondary Metabolites.

Niu J, Arentshorst M, Nair PD, Dai Z, Baker SE, Frisvad JC, Nielsen KF, Punt PJ, Ram AF.

G3 (Bethesda). 2015 Nov 13;6(1):193-204. doi: 10.1534/g3.115.024067.

14.

Genome mining and functional genomics for siderophore production in Aspergillus niger.

Franken AC, Lechner BE, Werner ER, Haas H, Lokman BC, Ram AF, van den Hondel CA, de Weert S, Punt PJ.

Brief Funct Genomics. 2014 Nov;13(6):482-92. doi: 10.1093/bfgp/elu026. Epub 2014 Jul 25.

PMID:
25062661
15.

Aspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism.

Gruben BS, Zhou M, Wiebenga A, Ballering J, Overkamp KM, Punt PJ, de Vries RP.

Appl Microbiol Biotechnol. 2014 Jun;98(12):5531-40. doi: 10.1007/s00253-014-5607-9. Epub 2014 Feb 28.

PMID:
24682478
16.

Identifying inhibitory compounds in lignocellulosic biomass hydrolysates using an exometabolomics approach.

Zha Y, Westerhuis JA, Muilwijk B, Overkamp KM, Nijmeijer BM, Coulier L, Smilde AK, Punt PJ.

BMC Biotechnol. 2014 Mar 21;14:22. doi: 10.1186/1472-6750-14-22.

17.

Molecular genetic analysis of vesicular transport in Aspergillus niger reveals partial conservation of the molecular mechanism of exocytosis in fungi.

Kwon MJ, Arentshorst M, Fiedler M, de Groen FL, Punt PJ, Meyer V, Ram AF.

Microbiology. 2014 Feb;160(Pt 2):316-29. doi: 10.1099/mic.0.074252-0. Epub 2013 Dec 2.

PMID:
24295824
18.

The role of coproporphyrinogen III oxidase and ferrochelatase genes in heme biosynthesis and regulation in Aspergillus niger.

Franken AC, Werner ER, Haas H, Lokman BC, van den Hondel CA, Ram AF, de Weert S, Punt PJ.

Appl Microbiol Biotechnol. 2013 Nov;97(22):9773-85. doi: 10.1007/s00253-013-5274-2. Epub 2013 Oct 11.

PMID:
24113826
19.

Pichia anomala 29X: a resistant strain for lignocellulosic biomass hydrolysate fermentation.

Zha Y, Hossain AH, Tobola F, Sedee N, Havekes M, Punt PJ.

FEMS Yeast Res. 2013 Nov;13(7):609-17. doi: 10.1111/1567-1364.12062. Epub 2013 Aug 12. Erratum in: FEMS Yeast Res. 2014 Mar;14(2):368.

20.

Analysis of oligosaccharides in lignocellulosic biomass hydrolysates by high-performance anion-exchange chromatography coupled with mass spectrometry (HPAEC-MS).

Coulier L, Zha Y, Bas R, Punt PJ.

Bioresour Technol. 2013 Apr;133:221-31. doi: 10.1016/j.biortech.2013.01.085. Epub 2013 Jan 28.

PMID:
23428819

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