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Items: 1 to 20 of 39

1.

Effects of Sterols on the Interaction of SDS, Benzalkonium Chloride, and A Novel Compound, Kor105, with Membranes.

Jiménez-Munguía I, Volynsky PE, Batishchev OV, Akimov SA, Korshunova GA, Smirnova EA, Knorre DA, Sokolov SS, Severin FF.

Biomolecules. 2019 Oct 18;9(10). pii: E627. doi: 10.3390/biom9100627.

2.

Familial L723P Mutation Can Shift the Distribution between the Alternative APP Transmembrane Domain Cleavage Cascades by Local Unfolding of the Ε-Cleavage Site Suggesting a Straightforward Mechanism of Alzheimer's Disease Pathogenesis.

Bocharov EV, Nadezhdin KD, Urban AS, Volynsky PE, Pavlov KV, Efremov RG, Arseniev AS, Bocharova OV.

ACS Chem Biol. 2019 Jul 19;14(7):1573-1582. doi: 10.1021/acschembio.9b00309. Epub 2019 Jun 19.

PMID:
31180641
3.

Specific refolding pathway of viscumin A chain in membrane-like medium reveals a possible mechanism of toxin entry into cell.

Volynsky PE, Nolde DE, Zakharova GS, Palmer RA, Tonevitsky AG, Efremov RG.

Sci Rep. 2019 Jan 23;9(1):413. doi: 10.1038/s41598-018-36310-6.

4.

Improving therapeutic potential of antibacterial spider venom peptides: coarse-grain molecular dynamics guided approach.

Dubovskii PV, Ignatova AA, Volynsky PE, Ivanov IA, Zhmak MN, Feofanov AV, Efremov RG.

Future Med Chem. 2018 Oct 1;10(19):2309-2322. doi: 10.4155/fmc-2018-0170. Epub 2018 Sep 14.

PMID:
30215282
5.

Structural basis of the signal transduction via transmembrane domain of the human growth hormone receptor.

Bocharov EV, Lesovoy DM, Bocharova OV, Urban AS, Pavlov KV, Volynsky PE, Efremov RG, Arseniev AS.

Biochim Biophys Acta Gen Subj. 2018 Jun;1862(6):1410-1420. doi: 10.1016/j.bbagen.2018.03.022. Epub 2018 Mar 21.

PMID:
29571748
6.

Impact of membrane partitioning on the spatial structure of an S-type cobra cytotoxin.

Dubovskii PV, Dubinnyi MA, Volynsky PE, Pustovalova YE, Konshina AG, Utkin YN, Arseniev AS, Efremov RG.

J Biomol Struct Dyn. 2018 Oct;36(13):3463-3478. doi: 10.1080/07391102.2017.1389662. Epub 2017 Nov 6.

PMID:
28990854
7.

Pore formation in lipid membrane II: Energy landscape under external stress.

Akimov SA, Volynsky PE, Galimzyanov TR, Kuzmin PI, Pavlov KV, Batishchev OV.

Sci Rep. 2017 Oct 2;7(1):12509. doi: 10.1038/s41598-017-12749-x.

8.

Pore formation in lipid membrane I: Continuous reversible trajectory from intact bilayer through hydrophobic defect to transversal pore.

Akimov SA, Volynsky PE, Galimzyanov TR, Kuzmin PI, Pavlov KV, Batishchev OV.

Sci Rep. 2017 Sep 22;7(1):12152. doi: 10.1038/s41598-017-12127-7.

9.

Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.

Mineev KS, Goncharuk SA, Goncharuk MV, Volynsky PE, Novikova EV, Aresinev AS.

Sci Rep. 2017 Jul 31;7(1):6864. doi: 10.1038/s41598-017-07250-4.

10.

The Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment.

Bocharov EV, Bragin PE, Pavlov KV, Bocharova OV, Mineev KS, Polyansky AA, Volynsky PE, Efremov RG, Arseniev AS.

Biochemistry. 2017 Mar 28;56(12):1697-1705. doi: 10.1021/acs.biochem.6b01085. Epub 2017 Mar 17.

PMID:
28291355
11.

Temperature-sensitive gating of TRPV1 channel as probed by atomistic simulations of its trans- and juxtamembrane domains.

Chugunov AO, Volynsky PE, Krylov NA, Nolde DE, Efremov RG.

Sci Rep. 2016 Sep 9;6:33112. doi: 10.1038/srep33112.

12.

HER2 Transmembrane Domain Dimerization Coupled with Self-Association of Membrane-Embedded Cytoplasmic Juxtamembrane Regions.

Bragin PE, Mineev KS, Bocharova OV, Volynsky PE, Bocharov EV, Arseniev AS.

J Mol Biol. 2016 Jan 16;428(1):52-61. doi: 10.1016/j.jmb.2015.11.007. Epub 2015 Nov 14.

PMID:
26585403
13.

Adaptable Lipid Matrix Promotes Protein-Protein Association in Membranes.

Kuznetsov AS, Polyansky AA, Fleck M, Volynsky PE, Efremov RG.

J Chem Theory Comput. 2015 Sep 8;11(9):4415-26. doi: 10.1021/acs.jctc.5b00206. Epub 2015 Aug 18.

PMID:
26575933
14.

Liquid but durable: molecular dynamics simulations explain the unique properties of archaeal-like membranes.

Chugunov AO, Volynsky PE, Krylov NA, Boldyrev IA, Efremov RG.

Sci Rep. 2014 Dec 12;4:7462. doi: 10.1038/srep07462.

15.

PREDDIMER: a web server for prediction of transmembrane helical dimers.

Polyansky AA, Chugunov AO, Volynsky PE, Krylov NA, Nolde DE, Efremov RG.

Bioinformatics. 2014 Mar 15;30(6):889-90. doi: 10.1093/bioinformatics/btt645. Epub 2013 Nov 7.

PMID:
24202542
16.

Role of dimerization efficiency of transmembrane domains in activation of fibroblast growth factor receptor 3.

Volynsky PE, Polyansky AA, Fakhrutdinova GN, Bocharov EV, Efremov RG.

J Am Chem Soc. 2013 Jun 5;135(22):8105-8. doi: 10.1021/ja4011942. Epub 2013 May 23.

PMID:
23679838
17.

Multistate organization of transmembrane helical protein dimers governed by the host membrane.

Polyansky AA, Volynsky PE, Efremov RG.

J Am Chem Soc. 2012 Sep 5;134(35):14390-400. doi: 10.1021/ja303483k. Epub 2012 Aug 23.

PMID:
22889089
18.

Structural, dynamic, and functional aspects of helix association in membranes: a computational view.

Polyansky AA, Volynsky PE, Efremov RG.

Adv Protein Chem Struct Biol. 2011;83:129-61. doi: 10.1016/B978-0-12-381262-9.00004-5. Review.

PMID:
21570667
19.

Structure elucidation of dimeric transmembrane domains of bitopic proteins.

Bocharov EV, Volynsky PE, Pavlov KV, Efremov RG, Arseniev AS.

Cell Adh Migr. 2010 Apr-Jun;4(2):284-98. Epub 2010 May 1. Review.

20.

Left-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases.

Bocharov EV, Mayzel ML, Volynsky PE, Mineev KS, Tkach EN, Ermolyuk YS, Schulga AA, Efremov RG, Arseniev AS.

Biophys J. 2010 Mar 3;98(5):881-9. doi: 10.1016/j.bpj.2009.11.008.

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