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Items: 1 to 20 of 154

1.

RUCS: Rapid identification of PCR primers for unique core sequences.

Thomsen MCF, Hasman H, Westh H, Kaya H, Lund O.

Bioinformatics. 2017 Aug 30. doi: 10.1093/bioinformatics/btx526. [Epub ahead of print]

PMID:
28968748
2.

Qualitative analysis of MMI raters' scorings of medical school candidates: A matter of taste?

Christensen MK, Lykkegaard E, Lund O, O'Neill LD.

Adv Health Sci Educ Theory Pract. 2017 Sep 27. doi: 10.1007/s10459-017-9794-x. [Epub ahead of print]

PMID:
28956195
3.

High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction.

Engmark M, Jespersen MC, Lomonte B, Lund O, Laustsen AH.

Toxicon. 2017 Nov;138:151-158. doi: 10.1016/j.toxicon.2017.08.028. Epub 2017 Sep 1.

PMID:
28867663
4.

Assembly and analysis of 100 full MHC haplotypes from the Danish population.

Jensen JM, Villesen P, Friborg RM; Danish Pan-Genome Consortium, Mailund T, Besenbacher S, Schierup MH.

Genome Res. 2017 Sep;27(9):1597-1607. doi: 10.1101/gr.218891.116. Epub 2017 Aug 3.

5.

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference.

Maretty L, Jensen JM, Petersen B, Sibbesen JA, Liu S, Villesen P, Skov L, Belling K, Theil Have C, Izarzugaza JMG, Grosjean M, Bork-Jensen J, Grove J, Als TD, Huang S, Chang Y, Xu R, Ye W, Rao J, Guo X, Sun J, Cao H, Ye C, van Beusekom J, Espeseth T, Flindt E, Friborg RM, Halager AE, Le Hellard S, Hultman CM, Lescai F, Li S, Lund O, Løngren P, Mailund T, Matey-Hernandez ML, Mors O, Pedersen CNS, Sicheritz-Pontén T, Sullivan P, Syed A, Westergaard D, Yadav R, Li N, Xu X, Hansen T, Krogh A, Bolund L, Sørensen TIA, Pedersen O, Gupta R, Rasmussen S, Besenbacher S, Børglum AD, Wang J, Eiberg H, Kristiansen K, Brunak S, Schierup MH.

Nature. 2017 Aug 3;548(7665):87-91. doi: 10.1038/nature23264. Epub 2017 Jul 26.

PMID:
28746312
6.

Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping.

Engmark M, Lomonte B, Gutiérrez JM, Laustsen AH, De Masi F, Andersen MR, Lund O.

PLoS Negl Trop Dis. 2017 Jul 14;11(7):e0005768. doi: 10.1371/journal.pntd.0005768. eCollection 2017 Jul.

7.

Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

Petersen TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, Lund O, Møller Aarestrup F, Sicheritz-Pontén T.

PLoS One. 2017 Jun 12;12(6):e0179778. doi: 10.1371/journal.pone.0179778. eCollection 2017.

8.

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Roer L, Tchesnokova V, Allesøe R, Muradova M, Chattopadhyay S, Ahrenfeldt J, Thomsen MCF, Lund O, Hansen F, Hammerum AM, Sokurenko E, Hasman H.

J Clin Microbiol. 2017 Aug;55(8):2538-2543. doi: 10.1128/JCM.00737-17. Epub 2017 Jun 7.

PMID:
28592545
9.

High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology.

Nag S, Dalgaard MD, Kofoed PE, Ursing J, Crespo M, Andersen LO, Aarestrup FM, Lund O, Alifrangis M.

Sci Rep. 2017 May 25;7(1):2398. doi: 10.1038/s41598-017-02724-x.

10.

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

Petersen TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, Lund O, Møller Aarestrup F, Sicheritz-Pontén T.

PLoS One. 2017 May 3;12(5):e0176469. doi: 10.1371/journal.pone.0176469. eCollection 2017. Erratum in: PLoS One. 2017 Jun 12;12 (6):e0179778.

11.

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.

Hansen CS, Østerbye T, Marcatili P, Lund O, Buus S, Nielsen M.

PLoS One. 2017 Jan 17;12(1):e0168453. doi: 10.1371/journal.pone.0168453. eCollection 2017.

12.

Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals.

Tauriainen J, Scharf L, Frederiksen J, Naji A, Ljunggren HG, Sönnerborg A, Lund O, Reyes-Terán G, Hecht FM, Deeks SG, Betts MR, Buggert M, Karlsson AC.

Sci Rep. 2017 Jan 13;7:40354. doi: 10.1038/srep40354.

13.

Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania.

Kumburu HH, Sonda T, Mmbaga BT, Alifrangis M, Lund O, Kibiki G, Aarestrup FM.

Trop Med Int Health. 2017 Apr;22(4):454-464. doi: 10.1111/tmi.12836. Epub 2017 Feb 3.

14.

Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.

Ahrenfeldt J, Skaarup C, Hasman H, Pedersen AG, Aarestrup FM, Lund O.

BMC Genomics. 2017 Jan 5;18(1):19. doi: 10.1186/s12864-016-3407-6.

15.

New Genome-Wide Algorithm Identifies Novel In-Vivo Expressed Mycobacterium Tuberculosis Antigens Inducing Human T-Cell Responses with Classical and Unconventional Cytokine Profiles.

Coppola M, van Meijgaarden KE, Franken KL, Commandeur S, Dolganov G, Kramnik I, Schoolnik GK, Comas I, Lund O, Prins C, van den Eeden SJ, Korsvold GE, Oftung F, Geluk A, Ottenhoff TH.

Sci Rep. 2016 Nov 28;6:37793. doi: 10.1038/srep37793.

16.

High-throughput immuno-profiling of mamba (Dendroaspis) venom toxin epitopes using high-density peptide microarrays.

Engmark M, Andersen MR, Laustsen AH, Patel J, Sullivan E, de Masi F, Hansen CS, Kringelum JV, Lomonte B, Gutiérrez JM, Lund O.

Sci Rep. 2016 Nov 8;6:36629. doi: 10.1038/srep36629.

17.

CD4+ T cells with an activated and exhausted phenotype distinguish immunodeficiency during aviremic HIV-2 infection.

Buggert M, Frederiksen J, Lund O, Betts MR, Biague A, Nielsen M, Tauriainen J, Norrgren H, Medstrand P, Karlsson AC, Jansson M; SWEGUB CORE group.

AIDS. 2016 Oct 23;30(16):2415-2426.

18.

MetaPhinder-Identifying Bacteriophage Sequences in Metagenomic Data Sets.

Jurtz VI, Villarroel J, Lund O, Voldby Larsen M, Nielsen M.

PLoS One. 2016 Sep 29;11(9):e0163111. doi: 10.1371/journal.pone.0163111. eCollection 2016.

19.

Old habits die hard: a case study on how new ways of teaching colonoscopy affect the habitus of experienced clinicians.

Lund O, Andersen B, Christensen MK.

Int J Med Educ. 2016 Sep 19;7:297-308. doi: 10.5116/ijme.57d5.5693.

20.

DNA barcoding and isolation of vertically transmitted ascomycetes in sorghum from Burkina Faso: Epicoccum sorghinum is dominant in seedlings and appears as a common root pathogen.

Stokholm MS, Wulff EG, Zida EP, Thio IG, Néya JB, Soalla RW, Głazowska SE, Andresen M, Topbjerg HB, Boelt B, Lund OS.

Microbiol Res. 2016 Oct;191:38-50. doi: 10.1016/j.micres.2016.05.004. Epub 2016 May 21.

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