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Items: 1 to 20 of 161

1.

Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing.

Kumburu HH, Sonda T, Leekitcharoenphon P, van Zwetselaar M, Lukjancenko O, Alifrangis M, Lund O, Mmbaga BT, Kibiki G, Aarestrup FM.

Biomed Res Int. 2018 Jan 2;2018:2087693. doi: 10.1155/2018/2087693. eCollection 2018.

2.

Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots.

Nag S, Kofoed PE, Ursing J, Lemvigh CK, Allesøe RL, Rodrigues A, Svendsen CA, Jensen JD, Alifrangis M, Lund O, Aarestrup FM.

Malar J. 2018 Feb 23;17(1):91. doi: 10.1186/s12936-018-2232-6.

3.

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.

Kaya H, Hasman H, Larsen J, Stegger M, Johannesen TB, Allesøe RL, Lemvigh CK, Aarestrup FM, Lund O, Larsen AR.

mSphere. 2018 Feb 14;3(1). pii: e00612-17. doi: 10.1128/mSphere.00612-17. eCollection 2018 Jan-Feb.

4.

Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania.

Sonda T, Kumburu H, van Zwetselaar M, Alifrangis M, Mmbaga BT, Lund O, Aarestrup FM, Kibiki G.

Eur J Clin Microbiol Infect Dis. 2018 May;37(5):897-906. doi: 10.1007/s10096-018-3196-8. Epub 2018 Feb 20.

5.

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles.

Roer L, Johannesen TB, Hansen F, Stegger M, Tchesnokova V, Sokurenko E, Garibay N, Allesøe R, Thomsen MCF, Lund O, Hasman H, Hammerum AM.

J Clin Microbiol. 2018 Mar 26;56(4). pii: e00063-18. doi: 10.1128/JCM.00063-18. Print 2018 Apr. No abstract available.

PMID:
29436420
6.

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.

Zankari E, Allesøe R, Joensen KG, Cavaco LM, Lund O, Aarestrup FM.

J Antimicrob Chemother. 2017 Oct 1;72(10):2764-2768. doi: 10.1093/jac/dkx217.

7.

Multidrug-resistant Neisseria gonorrhoeae infection with ceftriaxone resistance and intermediate resistance to azithromycin, Denmark, 2017.

Terkelsen D, Tolstrup J, Johnsen CH, Lund O, Larsen HK, Worning P, Unemo M, Westh H.

Euro Surveill. 2017 Oct;22(42). doi: 10.2807/1560-7917.ES.2017.22.42.17-00659.

8.

RUCS: rapid identification of PCR primers for unique core sequences.

Thomsen MCF, Hasman H, Westh H, Kaya H, Lund O.

Bioinformatics. 2017 Dec 15;33(24):3917-3921. doi: 10.1093/bioinformatics/btx526.

9.

Qualitative analysis of MMI raters' scorings of medical school candidates: A matter of taste?

Christensen MK, Lykkegaard E, Lund O, O'Neill LD.

Adv Health Sci Educ Theory Pract. 2018 May;23(2):289-310. doi: 10.1007/s10459-017-9794-x. Epub 2017 Sep 27.

PMID:
28956195
10.

High-density peptide microarray exploration of the antibody response in a rabbit immunized with a neurotoxic venom fraction.

Engmark M, Jespersen MC, Lomonte B, Lund O, Laustsen AH.

Toxicon. 2017 Nov;138:151-158. doi: 10.1016/j.toxicon.2017.08.028. Epub 2017 Sep 1.

PMID:
28867663
11.

Assembly and analysis of 100 full MHC haplotypes from the Danish population.

Jensen JM, Villesen P, Friborg RM; Danish Pan-Genome Consortium, Mailund T, Besenbacher S, Schierup MH.

Genome Res. 2017 Sep;27(9):1597-1607. doi: 10.1101/gr.218891.116. Epub 2017 Aug 3.

12.

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference.

Maretty L, Jensen JM, Petersen B, Sibbesen JA, Liu S, Villesen P, Skov L, Belling K, Theil Have C, Izarzugaza JMG, Grosjean M, Bork-Jensen J, Grove J, Als TD, Huang S, Chang Y, Xu R, Ye W, Rao J, Guo X, Sun J, Cao H, Ye C, van Beusekom J, Espeseth T, Flindt E, Friborg RM, Halager AE, Le Hellard S, Hultman CM, Lescai F, Li S, Lund O, Løngren P, Mailund T, Matey-Hernandez ML, Mors O, Pedersen CNS, Sicheritz-Pontén T, Sullivan P, Syed A, Westergaard D, Yadav R, Li N, Xu X, Hansen T, Krogh A, Bolund L, Sørensen TIA, Pedersen O, Gupta R, Rasmussen S, Besenbacher S, Børglum AD, Wang J, Eiberg H, Kristiansen K, Brunak S, Schierup MH.

Nature. 2017 Aug 3;548(7665):87-91. doi: 10.1038/nature23264. Epub 2017 Jul 26.

PMID:
28746312
13.

Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping.

Engmark M, Lomonte B, Gutiérrez JM, Laustsen AH, De Masi F, Andersen MR, Lund O.

PLoS Negl Trop Dis. 2017 Jul 14;11(7):e0005768. doi: 10.1371/journal.pntd.0005768. eCollection 2017 Jul.

14.

Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

Petersen TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, Lund O, Møller Aarestrup F, Sicheritz-Pontén T.

PLoS One. 2017 Jun 12;12(6):e0179778. doi: 10.1371/journal.pone.0179778. eCollection 2017.

15.

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Roer L, Tchesnokova V, Allesøe R, Muradova M, Chattopadhyay S, Ahrenfeldt J, Thomsen MCF, Lund O, Hansen F, Hammerum AM, Sokurenko E, Hasman H.

J Clin Microbiol. 2017 Aug;55(8):2538-2543. doi: 10.1128/JCM.00737-17. Epub 2017 Jun 7.

16.

High throughput resistance profiling of Plasmodium falciparum infections based on custom dual indexing and Illumina next generation sequencing-technology.

Nag S, Dalgaard MD, Kofoed PE, Ursing J, Crespo M, Andersen LO, Aarestrup FM, Lund O, Alifrangis M.

Sci Rep. 2017 May 25;7(1):2398. doi: 10.1038/s41598-017-02724-x.

17.

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

Petersen TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, Lund O, Møller Aarestrup F, Sicheritz-Pontén T.

PLoS One. 2017 May 3;12(5):e0176469. doi: 10.1371/journal.pone.0176469. eCollection 2017. Erratum in: PLoS One. 2017 Jun 12;12 (6):e0179778.

18.

ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping.

Hansen CS, Østerbye T, Marcatili P, Lund O, Buus S, Nielsen M.

PLoS One. 2017 Jan 17;12(1):e0168453. doi: 10.1371/journal.pone.0168453. eCollection 2017.

19.

Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals.

Tauriainen J, Scharf L, Frederiksen J, Naji A, Ljunggren HG, Sönnerborg A, Lund O, Reyes-Terán G, Hecht FM, Deeks SG, Betts MR, Buggert M, Karlsson AC.

Sci Rep. 2017 Jan 13;7:40354. doi: 10.1038/srep40354.

20.

Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania.

Kumburu HH, Sonda T, Mmbaga BT, Alifrangis M, Lund O, Kibiki G, Aarestrup FM.

Trop Med Int Health. 2017 Apr;22(4):454-464. doi: 10.1111/tmi.12836. Epub 2017 Feb 3.

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