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Items: 1 to 20 of 38

1.

Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.

Yumura M, Yamamoto N, Yokoyama K, Mori H, Yomo T, Ichihashi N.

PLoS One. 2017 Mar 22;12(3):e0174130. doi: 10.1371/journal.pone.0174130. eCollection 2017.

2.

Constructive Approaches for Understanding the Origin of Self-Replication and Evolution.

Ichihashi N, Yomo T.

Life (Basel). 2016 Jul 13;6(3). pii: E26. doi: 10.3390/life6030026. Review.

3.

Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor.

Aita T, Ichihashi N, Yomo T.

J Theor Biol. 2016 Jul 21;401:38-42. doi: 10.1016/j.jtbi.2016.04.014. Epub 2016 Apr 16.

PMID:
27091052
4.

Adaptation and Diversification of an RNA Replication System under Initiation- or Termination-Impaired Translational Conditions.

Mizuuchi R, Ichihashi N, Yomo T.

Chembiochem. 2016 Jul 1;17(13):1229-32. doi: 10.1002/cbic.201600100. Epub 2016 Apr 28.

PMID:
27038303
5.

Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation.

Sunami T, Ichihashi N, Nishikawa T, Kazuta Y, Yomo T.

Chembiochem. 2016 Jul 1;17(13):1282-9. doi: 10.1002/cbic.201500662. Epub 2016 May 17.

PMID:
27037959
6.

Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system.

Bansho Y, Furubayashi T, Ichihashi N, Yomo T.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4045-50. doi: 10.1073/pnas.1524404113. Epub 2016 Mar 28.

7.

Replication of partial double-stranded RNAs by Qβ replicase.

Tomita K, Ichihashi N, Yomo T.

Biochem Biophys Res Commun. 2015 Nov 13;467(2):293-6. doi: 10.1016/j.bbrc.2015.09.169. Epub 2015 Oct 12.

8.

Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System.

Ichihashi N, Aita T, Motooka D, Nakamura S, Yomo T.

Mol Biol Evol. 2015 Dec;32(12):3205-14. doi: 10.1093/molbev/msv189. Epub 2015 Sep 4.

PMID:
26342111
9.

A design principle for a single-stranded RNA genome that replicates with less double-strand formation.

Usui K, Ichihashi N, Yomo T.

Nucleic Acids Res. 2015 Sep 18;43(16):8033-43. doi: 10.1093/nar/gkv742. Epub 2015 Jul 21.

10.

A transcription and translation-coupled DNA replication system using rolling-circle replication.

Sakatani Y, Ichihashi N, Kazuta Y, Yomo T.

Sci Rep. 2015 May 27;5:10404. doi: 10.1038/srep10404.

11.

Development of a reporter peptide that catalytically produces a fluorescent signal through α-complementation.

Nishiyama K, Ichihashi N, Kazuta Y, Yomo T.

Protein Sci. 2015 May;24(5):599-603. doi: 10.1002/pro.2667. Epub 2015 Apr 2.

12.

Simple identification of two causes of noise in an aptazyme system by monitoring cell-free transcription.

Ichihashi N, Kobori S, Yomo T.

Methods Enzymol. 2015;550:93-107. doi: 10.1016/bs.mie.2014.10.043. Epub 2015 Jan 5.

PMID:
25605382
13.

The evolutionary enhancement of genotype-phenotype linkages in the presence of multiple copies of genetic material.

Uno K, Sunami T, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

Chembiochem. 2014 Oct 13;15(15):2281-8. doi: 10.1002/cbic.201402299. Epub 2014 Sep 9.

PMID:
25205221
14.

Positive roles of compartmentalization in internal reactions.

Ichihashi N, Yomo T.

Curr Opin Chem Biol. 2014 Oct;22:12-7. doi: 10.1016/j.cbpa.2014.06.011. Epub 2014 Jul 15. Review.

PMID:
25032508
15.

Adaptive evolution of an artificial RNA genome to a reduced ribosome environment.

Mizuuchi R, Ichihashi N, Usui K, Kazuta Y, Yomo T.

ACS Synth Biol. 2015 Mar 20;4(3):292-8. doi: 10.1021/sb5000884. Epub 2014 Jun 24.

PMID:
24933578
16.

Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system.

Kazuta Y, Matsuura T, Ichihashi N, Yomo T.

J Biosci Bioeng. 2014 Nov;118(5):554-7. doi: 10.1016/j.jbiosc.2014.04.019. Epub 2014 May 28.

PMID:
24880499
17.

Effects of ribosomes on the kinetics of Qβ replication.

Usui K, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

FEBS Lett. 2014 Jan 3;588(1):117-23. doi: 10.1016/j.febslet.2013.11.018. Epub 2013 Nov 20.

18.

Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing.

Aita T, Ichihashi N, Yomo T.

Comput Biol Chem. 2013 Dec;47:221-30. doi: 10.1016/j.compbiolchem.2013.09.006. Epub 2013 Oct 10.

PMID:
24184706
19.

Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment.

Ichihashi N, Usui K, Kazuta Y, Sunami T, Matsuura T, Yomo T.

Nat Commun. 2013;4:2494. doi: 10.1038/ncomms3494.

PMID:
24088711
20.

Kinetic model of double-stranded RNA formation during long RNA replication by Qβ replicase.

Usui K, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

FEBS Lett. 2013 Aug 19;587(16):2565-71. doi: 10.1016/j.febslet.2013.06.033. Epub 2013 Jul 2.

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