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Items: 12

1.

Computational Inference Software for Tetrad Assembly from Randomly Arrayed Yeast Colonies.

Sakhanenko NA, Cromie GA, Dudley AM, Galas DJ.

G3 (Bethesda). 2019 Jul 9;9(7):2071-2088. doi: 10.1534/g3.119.400166.

2.

The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research.

Das S; Extracellular RNA Communication Consortium, Ansel KM, Bitzer M, Breakefield XO, Charest A, Galas DJ, Gerstein MB, Gupta M, Milosavljevic A, McManus MT, Patel T, Raffai RL, Rozowsky J, Roth ME, Saugstad JA, Van Keuren-Jensen K, Weaver AM, Laurent LC.

Cell. 2019 Apr 4;177(2):231-242. doi: 10.1016/j.cell.2019.03.023. Review.

PMID:
30951667
3.

Multivariate Analysis of Data Sets with Missing Values: An Information Theory-Based Reliability Function.

Uechi L, Galas DJ, Sakhanenko NA.

J Comput Biol. 2019 Feb;26(2):152-171. doi: 10.1089/cmb.2018.0179. Epub 2018 Nov 29.

4.

The Information Content of Discrete Functions and Their Application in Genetic Data Analysis.

Sakhanenko NA, Kunert-Graf J, Galas DJ.

J Comput Biol. 2017 Dec;24(12):1153-1178. doi: 10.1089/cmb.2017.0143. Epub 2017 Oct 13.

5.

Biological data analysis as an information theory problem: multivariable dependence measures and the shadows algorithm.

Sakhanenko NA, Galas DJ.

J Comput Biol. 2015 Nov;22(11):1005-24. doi: 10.1089/cmb.2015.0051. Epub 2015 Sep 3.

6.

Discovering pair-wise genetic interactions: an information theory-based approach.

Ignac TM, Skupin A, Sakhanenko NA, Galas DJ.

PLoS One. 2014 Mar 26;9(3):e92310. doi: 10.1371/journal.pone.0092310. eCollection 2014.

7.

Describing the complexity of systems: multivariable "set complexity" and the information basis of systems biology.

Galas DJ, Sakhanenko NA, Skupin A, Ignac T.

J Comput Biol. 2014 Feb;21(2):118-40. doi: 10.1089/cmb.2013.0039. Epub 2013 Dec 30.

8.

An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae.

Wilkening S, Lin G, Fritsch ES, Tekkedil MM, Anders S, Kuehn R, Nguyen M, Aiyar RS, Proctor M, Sakhanenko NA, Galas DJ, Gagneur J, Deutschbauer A, Steinmetz LM.

Genetics. 2014 Mar;196(3):853-65. doi: 10.1534/genetics.113.160291. Epub 2013 Dec 27.

9.

Relations between the set-complexity and the structure of graphs and their sub-graphs.

Ignac TM, Sakhanenko NA, Galas DJ.

EURASIP J Bioinform Syst Biol. 2012 Sep 21;2012(1):13. doi: 10.1186/1687-4153-2012-13.

10.

Probabilistic logic methods and some applications to biology and medicine.

Sakhanenko NA, Galas DJ.

J Comput Biol. 2012 Mar;19(3):316-36. doi: 10.1089/cmb.2011.0234. Review.

PMID:
22401592
11.

Markov logic networks in the analysis of genetic data.

Sakhanenko NA, Galas DJ.

J Comput Biol. 2010 Nov;17(11):1491-508. doi: 10.1089/cmb.2010.0044. Epub 2010 Oct 20.

12.

A systems-biology approach to modular genetic complexity.

Carter GW, Rush CG, Uygun F, Sakhanenko NA, Galas DJ, Galitski T.

Chaos. 2010 Jun;20(2):026102. doi: 10.1063/1.3455183. Review.

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