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Items: 1 to 20 of 88

1.

Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.

An CI, Ichihashi Y, Peng J, Sinha NR, Hagiwara N.

PLoS One. 2016 Nov 10;11(11):e0166574. doi: 10.1371/journal.pone.0166574. eCollection 2016.

2.

Left-right leaf asymmetry in decussate and distichous phyllotactic systems.

Martinez CC, Chitwood DH, Smith RS, Sinha NR.

Philos Trans R Soc Lond B Biol Sci. 2016 Dec 19;371(1710). pii: 20150412.

PMID:
27821524
3.

A sister of PIN1 gene in tomato (Solanum lycopersicum) defines leaf and flower organ initiation patterns by maintaining epidermal auxin flux.

Martinez CC, Koenig D, Chitwood DH, Sinha NR.

Dev Biol. 2016 Nov 1;419(1):85-98. doi: 10.1016/j.ydbio.2016.08.011. Epub 2016 Aug 20.

4.

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.

5.

Using gene networks in EvoDevo analyses.

Sinha NR, Rowland SD, Ichihashi Y.

Curr Opin Plant Biol. 2016 Oct;33:133-139. doi: 10.1016/j.pbi.2016.06.016. Epub 2016 Jul 22. Review.

PMID:
27455887
6.

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.

7.

Evolutionary and Environmental Forces Sculpting Leaf Development.

Chitwood DH, Sinha NR.

Curr Biol. 2016 Apr 4;26(7):R297-306. doi: 10.1016/j.cub.2016.02.033. Review.

8.

Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae).

Ostria-Gallardo E, Ranjan A, Chitwood DH, Kumar R, Townsley BT, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2016 Apr;210(2):694-708. doi: 10.1111/nph.13776. Epub 2015 Dec 18.

9.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.

PMID:
26569124
10.

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.

11.

Structured Light-Based 3D Reconstruction System for Plants.

Nguyen TT, Slaughter DC, Max N, Maloof JN, Sinha N.

Sensors (Basel). 2015 Jul 29;15(8):18587-612. doi: 10.3390/s150818587.

12.

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR.

Front Plant Sci. 2015 May 22;6:366. doi: 10.3389/fpls.2015.00366. eCollection 2015.

13.

An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia.

Ranjan A, Townsley BT, Ichihashi Y, Sinha NR, Chitwood DH.

PLoS Genet. 2015 Jan 8;11(1):e1004900. doi: 10.1371/journal.pgen.1004900. eCollection 2015 Jan.

14.

Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex.

Aguilar-Martínez JA, Uchida N, Townsley B, West DA, Yanez A, Lynn N, Kimura S, Sinha N.

Plant Physiol. 2015 Feb;167(2):424-42. doi: 10.1104/pp.114.248625. Epub 2014 Dec 18.

15.

Regulation of the KNOX-GA gene module induces heterophyllic alteration in North American lake cress.

Nakayama H, Nakayama N, Seiki S, Kojima M, Sakakibara H, Sinha N, Kimura S.

Plant Cell. 2014 Dec;26(12):4733-48. doi: 10.1105/tpc.114.130229. Epub 2014 Dec 16.

16.

Plant development: small RNAs and the metamorphosis of leaves.

Chitwood DH, Sinha NR.

Curr Biol. 2014 Nov 17;24(22):R1087-9. doi: 10.1016/j.cub.2014.10.013. Epub 2014 Nov 17.

17.

Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2014 Sep;26(9):3616-29. doi: 10.1105/tpc.114.130112. Epub 2014 Sep 30.

18.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
19.

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2616-21. doi: 10.1073/pnas.1402835111. Epub 2014 Jun 9.

20.

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model.

Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM.

Plant Physiol. 2014 Oct;166(2):455-69. doi: 10.1104/pp.114.239392. Epub 2014 May 27.

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