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Items: 1 to 20 of 95

1.

Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions.

Ostria-Gallardo E, Ranjan A, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2018 Oct;220(1):278-287. doi: 10.1111/nph.15278. Epub 2018 Jun 29.

PMID:
29956327
2.

Convergent Evolution and the Diverse Ontogenetic Origins of Tendrils in Angiosperms.

Sousa-Baena MS, Sinha NR, Hernandes-Lopes J, Lohmann LG.

Front Plant Sci. 2018 Apr 3;9:403. doi: 10.3389/fpls.2018.00403. eCollection 2018. Review.

3.

The molecular control of tendril development in angiosperms.

Sousa-Baena MS, Lohmann LG, Hernandes-Lopes J, Sinha NR.

New Phytol. 2018 May;218(3):944-958. doi: 10.1111/nph.15073. Epub 2018 Mar 9.

PMID:
29520789
4.

Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress.

Nakayama H, Sakamoto T, Okegawa Y, Kaminoyama K, Fujie M, Ichihashi Y, Kurata T, Motohashi K, Al-Shehbaz I, Sinha N, Kimura S.

Sci Rep. 2018 Feb 19;8(1):3302. doi: 10.1038/s41598-018-21646-w.

5.

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.

Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West DA, Zumstein K, Woodhouse M, Bubb K, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal RB.

Plant Cell. 2018 Jan;30(1):15-36. doi: 10.1105/tpc.17.00581. Epub 2017 Dec 11.

PMID:
29229750
6.

How Do Plants and Phytohormones Accomplish Heterophylly, Leaf Phenotypic Plasticity, in Response to Environmental Cues.

Nakayama H, Sinha NR, Kimura S.

Front Plant Sci. 2017 Oct 4;8:1717. doi: 10.3389/fpls.2017.01717. eCollection 2017. Review.

7.

Nuclear Transcriptomes at High Resolution Using Retooled INTACT.

Reynoso MA, Pauluzzi GC, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha NR, Brady SM, Bailey-Serres J.

Plant Physiol. 2018 Jan;176(1):270-281. doi: 10.1104/pp.17.00688. Epub 2017 Sep 27.

8.

Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.

An CI, Ichihashi Y, Peng J, Sinha NR, Hagiwara N.

PLoS One. 2016 Nov 10;11(11):e0166574. doi: 10.1371/journal.pone.0166574. eCollection 2016.

9.

Left-right leaf asymmetry in decussate and distichous phyllotactic systems.

Martinez CC, Chitwood DH, Smith RS, Sinha NR.

Philos Trans R Soc Lond B Biol Sci. 2016 Dec 19;371(1710). pii: 20150412.

10.

A sister of PIN1 gene in tomato (Solanum lycopersicum) defines leaf and flower organ initiation patterns by maintaining epidermal auxin flux.

Martinez CC, Koenig D, Chitwood DH, Sinha NR.

Dev Biol. 2016 Nov 1;419(1):85-98. doi: 10.1016/j.ydbio.2016.08.011. Epub 2016 Aug 20.

11.

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.

12.

Using gene networks in EvoDevo analyses.

Sinha NR, Rowland SD, Ichihashi Y.

Curr Opin Plant Biol. 2016 Oct;33:133-139. doi: 10.1016/j.pbi.2016.06.016. Epub 2016 Jul 22. Review.

PMID:
27455887
13.

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.

14.

Evolutionary and Environmental Forces Sculpting Leaf Development.

Chitwood DH, Sinha NR.

Curr Biol. 2016 Apr 4;26(7):R297-306. doi: 10.1016/j.cub.2016.02.033. Review.

15.

Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae).

Ostria-Gallardo E, Ranjan A, Chitwood DH, Kumar R, Townsley BT, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2016 Apr;210(2):694-708. doi: 10.1111/nph.13776. Epub 2015 Dec 18.

16.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.

PMID:
26569124
17.

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.

18.

Structured Light-Based 3D Reconstruction System for Plants.

Nguyen TT, Slaughter DC, Max N, Maloof JN, Sinha N.

Sensors (Basel). 2015 Jul 29;15(8):18587-612. doi: 10.3390/s150818587.

19.

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR.

Front Plant Sci. 2015 May 22;6:366. doi: 10.3389/fpls.2015.00366. eCollection 2015.

20.

An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia.

Ranjan A, Townsley BT, Ichihashi Y, Sinha NR, Chitwood DH.

PLoS Genet. 2015 Jan 8;11(1):e1004900. doi: 10.1371/journal.pgen.1004900. eCollection 2015 Jan.

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