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Cooperative Response of Pichia kudriavzevii and Saccharomyces cerevisiae to Lactic Acid Stress in Baijiu Fermentation.

Deng N, Du H, Xu Y.

J Agric Food Chem. 2020 Mar 27. doi: 10.1021/acs.jafc.9b08052. [Epub ahead of print]


A content-based literature recommendation system for datasets to improve data reusability - A case study on Gene Expression Omnibus (GEO) datasets.

Patra BG, Maroufy V, Soltanalizadeh B, Deng N, Zheng WJ, Roberts K, Wu H.

J Biomed Inform. 2020 Mar 6;104:103399. doi: 10.1016/j.jbi.2020.103399. [Epub ahead of print]


The diffusion, structural relaxation, and fragility of [VIO2+][Tf2N-]2 ionic liquid.

Tian S, Luo Y, Zhao Z, Deng N, Ren G.

J Mol Model. 2020 Feb 8;26(3):55. doi: 10.1007/s00894-020-4317-8.


Single-Molecule Long-Read Sequencing Reveals the Diversity of Full-Length Transcripts in Leaves of Gnetum (Gnetales).

Deng N, Hou C, Ma F, Liu C, Tian Y.

Int J Mol Sci. 2019 Dec 17;20(24). pii: E6350. doi: 10.3390/ijms20246350.


Gene expression comparison between primary triple-negative breast cancer and paired axillary and sentinel lymph node metastasis.

Srour MK, Gao B, Dadmanesh F, Carlson K, Qu Y, Deng N, Cui X, Giuliano AE.

Breast J. 2019 Nov 11. doi: 10.1111/tbj.13684. [Epub ahead of print]


Electronic medical record-based model to predict the risk of 90-day readmission for patients with heart failure.

Tan BY, Gu JY, Wei HY, Chen L, Yan SL, Deng N.

BMC Med Inform Decis Mak. 2019 Oct 15;19(1):193. doi: 10.1186/s12911-019-0915-8.


Pollination Drop Proteome and Reproductive Organ Transcriptome Comparison in Gnetum Reveals Entomophilous Adaptation.

Hou C, Saunders RMK, Deng N, Wan T, Su Y.

Genes (Basel). 2019 Oct 12;10(10). pii: E800. doi: 10.3390/genes10100800.


DLK mediates the neuronal intrinsic immune response and regulates glial reaction and neuropathic pain.

Hu Z, Deng N, Liu K, Zeng W.

Exp Neurol. 2019 Dec;322:113056. doi: 10.1016/j.expneurol.2019.113056. Epub 2019 Sep 5.


Exploring the Phylogeography of Ancient Platycladus orientalis in China by Specific-Locus Amplified Fragment Sequencing.

Chang E, Tian Y, Wang C, Deng N, Jiang Z, Liu C.

Int J Mol Sci. 2019 Aug 8;20(16). pii: E3871. doi: 10.3390/ijms20163871.


Syndecan-1 promotes lung fibrosis by regulating epithelial reprogramming through extracellular vesicles.

Parimon T, Yao C, Habiel DM, Ge L, Bora SA, Brauer R, Evans CM, Xie T, Alonso-Valenteen F, Medina-Kauwe LK, Jiang D, Noble PW, Hogaboam CM, Deng N, Burgy O, Antes TJ, Königshoff M, Stripp BR, Gharib SA, Chen P.

JCI Insight. 2019 Aug 8;5. pii: 129359. doi: 10.1172/jci.insight.129359.


Investigation of temporal and spatial heterogeneities of the immune responses to Bordetella pertussis infection in the lung and spleen of mice via analysis and modeling of dynamic microarray gene expression data.

Deng N, Ramirez JC, Carey M, Miao H, Arias CA, Rice AP, Wu H.

Infect Dis Model. 2019 Jun 7;4:215-226. doi: 10.1016/j.idm.2019.06.001. eCollection 2019.


Hyaluronan synthase 2-mediated hyaluronan production mediates Notch1 activation and liver fibrosis.

Yang YM, Noureddin M, Liu C, Ohashi K, Kim SY, Ramnath D, Powell EE, Sweet MJ, Roh YS, Hsin IF, Deng N, Liu Z, Liang J, Mena E, Shouhed D, Schwabe RF, Jiang D, Lu SC, Noble PW, Seki E.

Sci Transl Med. 2019 Jun 12;11(496). pii: eaat9284. doi: 10.1126/scitranslmed.aat9284.


Corrigendum to "Systematic Understanding of the Mechanism of Baicalin against Ischemic Stroke through a Network Pharmacology Approach".

Xu T, Ma C, Fan S, Deng N, Lian Y, Tan L, Du W, Zhang S, Liu S, Ren B, Li Z, Wang Q, Wang X, Cheng F.

Evid Based Complement Alternat Med. 2019 Apr 3;2019:4520704. doi: 10.1155/2019/4520704. eCollection 2019.


Malt1 Protease Is Critical in Maintaining Function of Regulatory T Cells and May Be a Therapeutic Target for Antitumor Immunity.

Cheng L, Deng N, Yang N, Zhao X, Lin X.

J Immunol. 2019 May 15;202(10):3008-3019. doi: 10.4049/jimmunol.1801614. Epub 2019 Apr 12.


Aptamer functionalized magnetic graphene oxide nanocomposites for highly selective capture of histones.

Chen Y, Jiang B, Hu Y, Deng N, Zhao B, Li X, Liang Z, Zhang L, Zhang Y.

Electrophoresis. 2019 Aug;40(16-17):2135-2141. doi: 10.1002/elps.201900061. Epub 2019 Apr 30.


Experimental study of rhBMP-2 chitosan nano-sustained release carrier-loaded PLGA/nHA scaffolds to construct mandibular tissue-engineered bone.

Deng N, Sun J, Li Y, Chen L, Chen C, Wu Y, Wang Z, Li L.

Arch Oral Biol. 2019 Jun;102:16-25. doi: 10.1016/j.archoralbio.2019.03.023. Epub 2019 Mar 28.


Significance of Photosynthetic Characters in the Evolution of Asian Gnetum (Gnetales).

Deng N, Hou C, Liu C, Li M, Bartish I, Tian Y, Chen W, Du C, Jiang Z, Shi S.

Front Plant Sci. 2019 Feb 5;10:39. doi: 10.3389/fpls.2019.00039. eCollection 2019.


PD-L1 on invasive fibroblasts drives fibrosis in a humanized model of idiopathic pulmonary fibrosis.

Geng Y, Liu X, Liang J, Habiel DM, Kulur V, Coelho AL, Deng N, Xie T, Wang Y, Liu N, Huang G, Kurkciyan A, Liu Z, Tang J, Hogaboam CM, Jiang D, Noble PW.

JCI Insight. 2019 Mar 21;4(6). pii: 125326. doi: 10.1172/jci.insight.125326. eCollection 2019 Mar 21.


Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis.

Chen G, Ramírez JC, Deng N, Qiu X, Wu C, Zheng WJ, Wu H.

Database (Oxford). 2019 Jan 1;2019. doi: 10.1093/database/bay145.


Systematic Understanding of the Mechanism of Baicalin against Ischemic Stroke through a Network Pharmacology Approach.

Xu T, Ma C, Fan S, Deng N, Lian Y, Tan L, Du W, Zhang S, Liu S, Ren B, Li Z, Wang Q, Wang X, Cheng F.

Evid Based Complement Alternat Med. 2018 Dec 17;2018:2582843. doi: 10.1155/2018/2582843. eCollection 2018. Erratum in: Evid Based Complement Alternat Med. 2019 Apr 3;2019:4520704.

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