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Items: 8

1.

Uncovering missed indels by leveraging unmapped reads.

Hasan MS, Wu X, Zhang L.

Sci Rep. 2019 Jul 31;9(1):11093. doi: 10.1038/s41598-019-47405-z.

2.

vi-HMM: a novel HMM-based method for sequence variant identification in short-read data.

Tang M, Hasan MS, Zhu H, Zhang L, Wu X.

Hum Genomics. 2019 Feb 13;13(1):9. doi: 10.1186/s40246-019-0194-6.

3.

UPS-indel: a Universal Positioning System for Indels.

Hasan MS, Wu X, Watson LT, Zhang L.

Sci Rep. 2017 Oct 26;7(1):14106. doi: 10.1038/s41598-017-14400-1.

4.

SPAI: an interactive platform for indel analysis.

Hasan MS, Zhang L.

BMC Genomics. 2016 Aug 31;17 Suppl 5:496. doi: 10.1186/s12864-016-2824-x.

5.

Performance evaluation of indel calling tools using real short-read data.

Hasan MS, Wu X, Zhang L.

Hum Genomics. 2015 Aug 19;9:20. doi: 10.1186/s40246-015-0042-2.

6.

Identifying pathogenicity islands in bacterial pathogenomics using computational approaches.

Che D, Hasan MS, Chen B.

Pathogens. 2014 Jan 13;3(1):36-56. doi: 10.3390/pathogens3010036. Review.

7.

GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences.

Hasan MS, Liu Q, Wang H, Fazekas J, Chen B, Che D.

Bioinformation. 2012;8(4):203-5. doi: 10.6026/97320630008203. Epub 2012 Feb 28.

8.

EGID: an ensemble algorithm for improved genomic island detection in genomic sequences.

Che D, Hasan MS, Wang H, Fazekas J, Huang J, Liu Q.

Bioinformation. 2011;7(6):311-4. Epub 2011 Nov 20.

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