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Items: 16

1.

What Can We Learn from a Metagenomic Analysis of a Georgian Bacteriophage Cocktail?

Zschach H, Joensen KG, Lindhard B, Lund O, Goderdzishvili M, Chkonia I, Jgenti G, Kvatadze N, Alavidze Z, Kutter EM, Hasman H, Larsen MV.

Viruses. 2015 Dec 12;7(12):6570-89. doi: 10.3390/v7122958.

2.

Reads2Type: a web application for rapid microbial taxonomy identification.

Saputra D, Rasmussen S, Larsen MV, Haddad N, Sperotto MM, Aarestrup FM, Lund O, Sicheritz-Pontén T.

BMC Bioinformatics. 2015 Nov 25;16:398. doi: 10.1186/s12859-015-0829-0.

3.

Improving biotech education through gamified laboratory simulations.

Bonde MT, Makransky G, Wandall J, Larsen MV, Morsing M, Jarmer H, Sommer MO.

Nat Biotechnol. 2014 Jul;32(7):694-7. doi: 10.1038/nbt.2955. No abstract available.

PMID:
25004234
4.

Benchmarking of methods for genomic taxonomy.

Larsen MV, Cosentino S, Lukjancenko O, Saputra D, Rasmussen S, Hasman H, Sicheritz-Pontén T, Aarestrup FM, Ussery DW, Lund O.

J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26.

5.

Targeting of conserved gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4(+) T cell depletion.

Perez CL, Milush JM, Buggert M, Eriksson EM, Larsen MV, Liegler T, Hartogensis W, Bacchetti P, Lund O, Hecht FM, Nixon DF, Karlsson AC.

AIDS Res Hum Retroviruses. 2013 Mar;29(3):602-12. doi: 10.1089/AID.2012.0171. Epub 2013 Jan 8.

6.

The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density.

Stranzl T, Larsen MV, Lund O, Nielsen M, Brunak S.

PLoS One. 2012;7(9):e38670. doi: 10.1371/journal.pone.0038670. Epub 2012 Sep 25.

7.

Multilocus sequence typing of total-genome-sequenced bacteria.

Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O.

J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11.

8.

Identification of MHC class II restricted T-cell-mediated reactivity against MHC class I binding Mycobacterium tuberculosis peptides.

Wang M, Tang ST, Stryhn A, Justesen S, Larsen MV, Dziegiel MH, Lewinsohn DM, Buus S, Lund O, Claesson MH.

Immunology. 2011 Apr;132(4):482-91. doi: 10.1111/j.1365-2567.2010.03383.x. Epub 2011 Feb 7.

9.

HLA class I binding 9mer peptides from influenza A virus induce CD4 T cell responses.

Wang M, Larsen MV, Nielsen M, Harndahl M, Justesen S, Dziegiel MH, Buus S, Tang ST, Lund O, Claesson MH.

PLoS One. 2010 May 7;5(5):e10533. doi: 10.1371/journal.pone.0010533.

10.

Impact of injecting drug use on mortality in Danish HIV-infected patients: a nation-wide population-based cohort study.

Larsen MV, Omland LH, Gerstoft J, Larsen CS, Jensen J, Obel N, Kronborg G.

Addiction. 2010 Mar;105(3):529-35. doi: 10.1111/j.1360-0443.2009.02827.x.

PMID:
20402997
11.

Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands.

Juncker AS, Larsen MV, Weinhold N, Nielsen M, Brunak S, Lund O.

PLoS One. 2009 Oct 14;4(10):e7448. doi: 10.1371/journal.pone.0007448.

12.

Bacteriology in acute exacerbation of chronic obstructive pulmonary disease in patients admitted to hospital.

Larsen MV, Janner JH, Nielsen SD, Friis-Møller A, Ringbaek T, Lange P.

Scand J Infect Dis. 2009;41(1):26-32. doi: 10.1080/00365540802484828.

PMID:
18855228
13.

Cohort profile: the Danish HIV cohort study.

Obel N, Engsig FN, Rasmussen LD, Larsen MV, Omland LH, Sørensen HT.

Int J Epidemiol. 2009 Oct;38(5):1202-6. doi: 10.1093/ije/dyn192. Epub 2008 Sep 17. No abstract available.

PMID:
18799495
14.

Broadly immunogenic HLA class I supertype-restricted elite CTL epitopes recognized in a diverse population infected with different HIV-1 subtypes.

Pérez CL, Larsen MV, Gustafsson R, Norström MM, Atlas A, Nixon DF, Nielsen M, Lund O, Karlsson AC.

J Immunol. 2008 Apr 1;180(7):5092-100.

15.

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M.

BMC Bioinformatics. 2007 Oct 31;8:424.

16.

CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening.

Wang M, Lamberth K, Harndahl M, Røder G, Stryhn A, Larsen MV, Nielsen M, Lundegaard C, Tang ST, Dziegiel MH, Rosenkvist J, Pedersen AE, Buus S, Claesson MH, Lund O.

Vaccine. 2007 Apr 12;25(15):2823-31. Epub 2006 Dec 29.

PMID:
17254671

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