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Items: 1 to 20 of 25

1.

The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins.

Banach M, Konieczny L, Roterman I.

Molecules. 2019 Dec 3;24(23). pii: E4395. doi: 10.3390/molecules24234395. Review.

2.

Internal force field in selected proteins.

Ptak-Kaczor M, Banach M, Konieczny L, Roterman I.

Acta Biochim Pol. 2019 Nov 20. doi: 10.18388/abp.2019_2865. [Epub ahead of print]

3.

Different Synergy in Amyloids and Biologically Active Forms of Proteins.

Fabian P, Stapor K, Banach M, Ptak-Kaczor M, Konieczny L, Roterman I.

Int J Mol Sci. 2019 Sep 9;20(18). pii: E4436. doi: 10.3390/ijms20184436.

4.

Possible Mechanism of Amyloidogenesis of V Domains.

Banach M, Kalinowska B, Konieczny L, Roterman I.

In: Roterman I, Konieczny L, editors. Self-Assembled Molecules – New Kind of Protein Ligands: Supramolecular Ligands [Internet]. Cham (CH): Springer; 2018. Chapter 5.
2017 Nov 4.

5.

Structural analysis of the Aβ(11-42) amyloid fibril based on hydrophobicity distribution.

Roterman I, Dułak D, Gadzała M, Banach M, Konieczny L.

J Comput Aided Mol Des. 2019 Jul;33(7):665-675. doi: 10.1007/s10822-019-00209-9. Epub 2019 Jul 10.

6.

Secondary and Supersecondary Structure of Proteins in Light of the Structure of Hydrophobic Cores.

Banach M, Konieczny L, Roterman I.

Methods Mol Biol. 2019;1958:347-378. doi: 10.1007/978-1-4939-9161-7_19.

PMID:
30945229
7.

The aqueous environment as an active participant in the protein folding process.

Gadzała M, Dułak D, Kalinowska B, Baster Z, Bryliński M, Konieczny L, Banach M, Roterman I.

J Mol Graph Model. 2019 Mar;87:227-239. doi: 10.1016/j.jmgm.2018.12.008. Epub 2018 Dec 14.

8.

Structural analysis of the Aβ(15-40) amyloid fibril based on hydrophobicity distribution.

Dułak D, Banach M, Gadzała M, Konieczny L, Roterman I.

Acta Biochim Pol. 2018 Nov 21;65(4):595-604. doi: 10.18388/abp.2018_2647.

9.

Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model.

Dułak D, Gadzała M, Banach M, Ptak M, Wiśniowski Z, Konieczny L, Roterman I.

Int J Mol Sci. 2018 Sep 25;19(10). pii: E2910. doi: 10.3390/ijms19102910.

10.

Towards the design of anti-amyloid short peptide helices.

Roterman I, Banach M, Konieczny L.

Bioinformation. 2018 Jan 31;14(1):1-7. doi: 10.6026/97320630014001. eCollection 2018.

11.

Antifreeze proteins.

Roterman I, Banach M, Konieczny L.

Bioinformation. 2017 Dec 31;13(12):400-401. doi: 10.6026/97320630013400. eCollection 2017.

12.

Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments.

Roterman I, Banach M, Konieczny L.

Pharmaceuticals (Basel). 2017 Nov 16;10(4). pii: E89. doi: 10.3390/ph10040089.

13.

Is the hydrophobic core a universal structural element in proteins?

Kalinowska B, Banach M, Wiśniowski Z, Konieczny L, Roterman I.

J Mol Model. 2017 Jul;23(7):205. doi: 10.1007/s00894-017-3367-z. Epub 2017 Jun 16.

14.

Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.

Dygut J, Kalinowska B, Banach M, Piwowar M, Konieczny L, Roterman I.

Int J Mol Sci. 2016 Oct 18;17(10). pii: E1741.

15.

Contribution to the prediction of the fold code: application to immunoglobulin and flavodoxin cases.

Banach M, Prudhomme N, Carpentier M, Duprat E, Papandreou N, Kalinowska B, Chomilier J, Roterman I.

PLoS One. 2015 Apr 27;10(4):e0125098. doi: 10.1371/journal.pone.0125098. eCollection 2015.

16.

The fuzzy oil drop model, based on hydrophobicity density distribution, generalizes the influence of water environment on protein structure and function.

Banach M, Konieczny L, Roterman I.

J Theor Biol. 2014 Oct 21;359:6-17. doi: 10.1016/j.jtbi.2014.05.007. Epub 2014 May 21.

17.

Intrinsically disordered proteins--relation to general model expressing the active role of the water environment.

Kalinowska B, Banach M, Konieczny L, Marchewka D, Roterman I.

Adv Protein Chem Struct Biol. 2014;94:315-46. doi: 10.1016/B978-0-12-800168-4.00008-1.

PMID:
24629190
18.

Structural role of exon-coded fragment of polypeptide chains in selected enzymes.

Piwowar M, Banach M, Konieczny L, Roterman I.

J Theor Biol. 2013 Nov 21;337:15-23. doi: 10.1016/j.jtbi.2013.07.016. Epub 2013 Jul 26.

PMID:
23896319
19.

Hydrophobic core formation in protein complex of cathepsin.

Piwowar M, Banach M, Konieczny L, Roterman I.

J Biomol Struct Dyn. 2014;32(7):1023-32. doi: 10.1080/07391102.2013.801784. Epub 2013 Jul 5.

PMID:
23826628
20.

Intermediates in the protein folding process: a computational model.

Roterman I, Konieczny L, Banach M, Jurkowski W.

Int J Mol Sci. 2011;12(8):4850-60. doi: 10.3390/ijms11084850. Epub 2011 Jul 29.

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