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Items: 1 to 20 of 64

1.

Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach.

Yamada KD, Omori S, Nishi H, Miyagi M.

BMC Bioinformatics. 2017 Jun 2;18(1):289. doi: 10.1186/s12859-017-1699-4.

2.

Methylene blue decreases mitochondrial lysine acetylation in the diabetic heart.

Berthiaume JM, Hsiung CH, Austin AB, McBrayer SP, Depuydt MM, Chandler MP, Miyagi M, Rosca MG.

Mol Cell Biochem. 2017 Aug;432(1-2):7-24. doi: 10.1007/s11010-017-2993-1. Epub 2017 Mar 16.

3.

Stability of domain 4 of the anthrax toxin protective antigen and the effect of the VWA domain of CMG2 on stability.

Mamillapalli S, Miyagi M, Bann JG.

Protein Sci. 2017 Feb;26(2):355-364. doi: 10.1002/pro.3087.

4.

Monitoring the synthesis of biomolecules using mass spectrometry.

Miyagi M, Kasumov T.

Philos Trans A Math Phys Eng Sci. 2016 Oct 28;374(2079). pii: 20150378. doi: 10.1098/rsta.2015.0378.

5.

A small molecule mitigates hearing loss in a mouse model of Usher syndrome III.

Alagramam KN, Gopal SR, Geng R, Chen DH, Nemet I, Lee R, Tian G, Miyagi M, Malagu KF, Lock CJ, Esmieu WR, Owens AP, Lindsay NA, Ouwehand K, Albertus F, Fischer DF, Bürli RW, MacLeod AM, Harte WE, Palczewski K, Imanishi Y.

Nat Chem Biol. 2016 Jun;12(6):444-51. doi: 10.1038/nchembio.2069. Epub 2016 Apr 25.

6.

Isotope effect analyses provide evidence for an altered transition state for RNA 2'-O-transphosphorylation catalyzed by Zn(2+).

Zhang S, Gu H, Chen H, Strong E, Ollie EW, Kellerman D, Liang D, Miyagi M, Anderson VE, Piccirilli JA, York DM, Harris ME.

Chem Commun (Camb). 2016 Mar 25;52(24):4462-5. doi: 10.1039/c5cc10212j.

7.

Identification of Non-nucleoside Human Ribonucleotide Reductase Modulators.

Ahmad MF, Huff SE, Pink J, Alam I, Zhang A, Perry K, Harris ME, Misko T, Porwal SK, Oleinick NL, Miyagi M, Viswanathan R, Dealwis CG.

J Med Chem. 2015 Dec 24;58(24):9498-509. doi: 10.1021/acs.jmedchem.5b00929. Epub 2015 Dec 9.

8.

Mitochondrial complex I defect and increased fatty acid oxidation enhance protein lysine acetylation in the diabetic heart.

Vazquez EJ, Berthiaume JM, Kamath V, Achike O, Buchanan E, Montano MM, Chandler MP, Miyagi M, Rosca MG.

Cardiovasc Res. 2015 Sep 1;107(4):453-65. doi: 10.1093/cvr/cvv183. Epub 2015 Jun 22.

PMID:
26101264
9.

Analysis of conformational changes in rhodopsin by histidine hydrogen-deuterium exchange.

Lodowski DT, Miyagi M.

Methods Mol Biol. 2015;1271:123-32. doi: 10.1007/978-1-4939-2330-4_9.

PMID:
25697521
10.

Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans.

Vukoti K, Yu X, Sheng Q, Saha S, Feng Z, Hsu AL, Miyagi M.

J Proteome Res. 2015 Mar 6;14(3):1483-94. doi: 10.1021/acs.jproteome.5b00021. Epub 2015 Feb 25.

11.

Isotopic labeling of mammalian G protein-coupled receptors heterologously expressed in Caenorhabditis elegans.

Salom D, Cao P, Yuan Y, Miyagi M, Feng Z, Palczewski K.

Anal Biochem. 2015 Mar 1;472:30-6. doi: 10.1016/j.ab.2014.11.008. Epub 2014 Nov 20.

12.

Long-range stabilization of anthrax protective antigen upon binding to CMG2.

Mullangi V, Mamillapalli S, Anderson DJ, Bann JG, Miyagi M.

Biochemistry. 2014 Sep 30;53(38):6084-91. doi: 10.1021/bi500718g. Epub 2014 Sep 15.

13.

O18Quant: a semiautomatic strategy for quantitative analysis of high-resolution 16O/18O labeled data.

Guo Y, Miyagi M, Zeng R, Sheng Q.

Biomed Res Int. 2014;2014:971857. doi: 10.1155/2014/971857. Epub 2014 May 11.

14.

Imidazole C-2 hydrogen/deuterium exchange reaction at histidine for probing protein structure and function with matrix-assisted laser desorption ionization mass spectrometry.

Hayashi N, Kuyama H, Nakajima C, Kawahara K, Miyagi M, Nishimura O, Matsuo H, Nakazawa T.

Biochemistry. 2014 Mar 25;53(11):1818-26. doi: 10.1021/bi401260f. Epub 2014 Mar 14. No abstract available.

15.

Conformational flexibility in the catalytic triad revealed by the high-resolution crystal structure of Streptomyces erythraeus trypsin in an unliganded state.

Blankenship E, Vukoti K, Miyagi M, Lodowski DT.

Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):833-40. doi: 10.1107/S1399004713033658. Epub 2014 Feb 22.

16.

(19)F nuclear magnetic resonance and crystallographic studies of 5-fluorotryptophan-labeled anthrax protective antigen and effects of the receptor on stability.

Chadegani F, Lovell S, Mullangi V, Miyagi M, Battaile KP, Bann JG.

Biochemistry. 2014 Feb 4;53(4):690-701. doi: 10.1021/bi401405s. Epub 2014 Jan 15.

17.

Proteomic profiling and functional characterization of early and late shoulder osteoarthritis.

Wanner J, Subbaiah R, Skomorovska-Prokvolit Y, Shishani Y, Boilard E, Mohan S, Gillespie R, Miyagi M, Gobezie R.

Arthritis Res Ther. 2013 Nov 6;15(6):R180. doi: 10.1186/ar4369.

18.

PRMT5 dimethylates R30 of the p65 subunit to activate NF-κB.

Wei H, Wang B, Miyagi M, She Y, Gopalan B, Huang DB, Ghosh G, Stark GR, Lu T.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13516-21. doi: 10.1073/pnas.1311784110. Epub 2013 Jul 31.

19.

Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation.

Gu H, Zhang S, Wong KY, Radak BK, Dissanayake T, Kellerman DL, Dai Q, Miyagi M, Anderson VE, York DM, Piccirilli JA, Harris ME.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):13002-7. doi: 10.1073/pnas.1215086110. Epub 2013 Jul 22.

20.

Oxygen-coupled redox regulation of the skeletal muscle ryanodine receptor/Ca2+ release channel (RyR1): sites and nature of oxidative modification.

Sun QA, Wang B, Miyagi M, Hess DT, Stamler JS.

J Biol Chem. 2013 Aug 9;288(32):22961-71. doi: 10.1074/jbc.M113.480228. Epub 2013 Jun 24.

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