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Items: 13

1.

A CRISPR activation screen identifies genes protecting from Zika virus infection.

Dukhovny A, Lamkiewicz K, Chen Q, Fricke M, Jabrane-Ferrat N, Marz M, Jung JU, Sklan EH.

J Virol. 2019 May 29. pii: JVI.00211-19. doi: 10.1128/JVI.00211-19. [Epub ahead of print]

PMID:
31142663
2.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.

Gerresheim GK, Bathke J, Michel AM, Andreev DE, Shalamova LA, Rossbach O, Hu P, Glebe D, Fricke M, Marz M, Goesmann A, Kiniry SJ, Baranov PV, Shatsky IN, Niepmann M.

Int J Mol Sci. 2019 Mar 15;20(6). pii: E1321. doi: 10.3390/ijms20061321.

3.

Global importance of RNA secondary structures in protein-coding sequences.

Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M.

Bioinformatics. 2019 Feb 15;35(4):579-583. doi: 10.1093/bioinformatics/bty678.

PMID:
30101307
4.

Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions.

Madhugiri R, Karl N, Petersen D, Lamkiewicz K, Fricke M, Wend U, Scheuer R, Marz M, Ziebuhr J.

Virology. 2018 Apr;517:44-55. doi: 10.1016/j.virol.2017.11.025. Epub 2017 Dec 6.

5.

Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. No abstract available.

6.

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Erratum in: Sci Rep. 2017 Jan 11;7:39421.

7.

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3' untranslated region: function in replication and influence of RNA secondary structure.

Gerresheim GK, Dünnes N, Nieder-Röhrmann A, Shalamova LA, Fricke M, Hofacker I, Höner Zu Siederdissen C, Marz M, Niepmann M.

Cell Mol Life Sci. 2017 Feb;74(4):747-760. doi: 10.1007/s00018-016-2377-9. Epub 2016 Sep 27.

PMID:
27677491
8.

Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2016 Oct;22(10):1640.1. doi: 10.1261/rna.058123.116. No abstract available.

9.

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.

Fricke M, Marz M.

Bioinformatics. 2016 Oct 1;32(19):2928-35. doi: 10.1093/bioinformatics/btw323. Epub 2016 Jun 10.

PMID:
27288498
10.

Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2015 Jul;21(7):1219-32. doi: 10.1261/rna.049338.114. Epub 2015 May 11. Erratum in: RNA. 2016 Oct;22(10 ):1640.1.

11.

RNA structure analysis of alphacoronavirus terminal genome regions.

Madhugiri R, Fricke M, Marz M, Ziebuhr J.

Virus Res. 2014 Dec 19;194:76-89. doi: 10.1016/j.virusres.2014.10.001. Epub 2014 Oct 13. Review.

PMID:
25307890
12.

Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures.

Qin J, Fricke M, Marz M, Stadler PF, Backofen R.

Algorithms Mol Biol. 2014 Sep 11;9:19. doi: 10.1186/1748-7188-9-19. eCollection 2014.

13.

Challenges in RNA virus bioinformatics.

Marz M, Beerenwinkel N, Drosten C, Fricke M, Frishman D, Hofacker IL, Hoffmann D, Middendorf M, Rattei T, Stadler PF, Töpfer A.

Bioinformatics. 2014 Jul 1;30(13):1793-9. doi: 10.1093/bioinformatics/btu105. Epub 2014 Mar 3. Review.

PMID:
24590443

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