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Items: 1 to 20 of 35

1.

Bioinformatics Resources for Plant Genomics: Opportunities and Bottlenecks in The -omics Era.

Ambrosino L, Colantuono C, Monticolo F, Chiusano ML.

Curr Issues Mol Biol. 2017 Sep 8;27:71-88. doi: 10.21775/cimb.027.071. [Epub ahead of print]

PMID:
28885175
2.

Trichoderma harzianum enhances tomato indirect defense against aphids.

Coppola M, Cascone P, Chiusano ML, Colantuono C, Lorito M, Pennacchio F, Rao R, Woo SL, Guerrieri E, Digilio MC.

Insect Sci. 2017 May 5. doi: 10.1111/1744-7917.12475. [Epub ahead of print]

PMID:
28475289
3.

Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships.

Ambrosino L, Chiusano ML.

Bioinform Biol Insights. 2017 Feb 23;11:1177932217690136. doi: 10.1177/1177932217690136. eCollection 2017.

4.

Distinct gene networks drive differential response to abrupt or gradual water deficit in potato.

Ambrosone A, Batelli G, Bostan H, D'Agostino N, Chiusano ML, Perrotta G, Leone A, Grillo S, Costa A.

Gene. 2017 Jan 15;597:30-39. doi: 10.1016/j.gene.2016.10.024. Epub 2016 Oct 19.

PMID:
27771448
5.

Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum.

Simm S, Scharf KD, Jegadeesan S, Chiusano ML, Firon N, Schleiff E.

Bioinform Biol Insights. 2016 Sep 26;10:185-207. eCollection 2016.

6.

Bioinformatics resources for pollen.

Ambrosino L, Bostan H, Ruggieri V, Chiusano ML.

Plant Reprod. 2016 Jun;29(1-2):133-47. doi: 10.1007/s00497-016-0284-8. Epub 2016 Jun 8. Review.

PMID:
27271281
7.

Integrated bioinformatics to decipher the ascorbic acid metabolic network in tomato.

Ruggieri V, Bostan H, Barone A, Frusciante L, Chiusano ML.

Plant Mol Biol. 2016 Jul;91(4-5):397-412. doi: 10.1007/s11103-016-0469-4. Epub 2016 Mar 23.

PMID:
27007138
8.

Self-DNA inhibitory effects: Underlying mechanisms and ecological implications.

Cartenì F, Bonanomi G, Giannino F, Incerti G, Vincenot CE, Chiusano ML, Mazzoleni S.

Plant Signal Behav. 2016;11(4):e1158381. doi: 10.1080/15592324.2016.1158381. Review.

9.

Gene co-expression analyses: an overview from microarray collections in Arabidopsis thaliana.

Di Salle P, Incerti G, Colantuono C, Chiusano ML.

Brief Bioinform. 2017 Mar 1;18(2):215-225. doi: 10.1093/bib/bbw002.

PMID:
26891982
10.

Identification of novel small ncRNAs in pollen of tomato.

Bokszczanin KL, Krezdorn N, Fragkostefanakis S, Müller S, Rycak L, Chen Y, Hoffmeier K, Kreutz J, Paupière MJ, Chaturvedi P, Iannacone R, Müller F, Bostan H, Chiusano ML, Scharf KD, Rotter B, Schleiff E, Winter P; SPOT-ITN Consortium (Solanaceae Pollen Thermotolerance Initial Training Network Consortium).

BMC Genomics. 2015 Sep 18;16:714. doi: 10.1186/s12864-015-1901-x.

11.

NexGenEx-Tom: a gene expression platform to investigate the functionalities of the tomato genome.

Bostan H, Chiusano ML.

BMC Plant Biol. 2015 Feb 13;15:48. doi: 10.1186/s12870-014-0412-2.

12.

Inhibitory effects of extracellular self-DNA: a general biological process?

Mazzoleni S, Cartenì F, Bonanomi G, Senatore M, Termolino P, Giannino F, Incerti G, Rietkerk M, Lanzotti V, Chiusano ML.

New Phytol. 2015 Apr;206(1):127-32. doi: 10.1111/nph.13306. Epub 2015 Jan 28.

13.

A DArT marker-based linkage map for wild potato Solanum bulbocastanum facilitates structural comparisons between Solanum A and B genomes.

Iorizzo M, Gao L, Mann H, Traini A, Chiusano ML, Kilian A, Aversano R, Carputo D, Bradeen JM.

BMC Genet. 2014 Nov 18;15:123. doi: 10.1186/s12863-014-0123-6.

14.

Inhibitory and toxic effects of extracellular self-DNA in litter: a mechanism for negative plant-soil feedbacks?

Mazzoleni S, Bonanomi G, Incerti G, Chiusano ML, Termolino P, Mingo A, Senatore M, Giannino F, Cartenì F, Rietkerk M, Lanzotti V.

New Phytol. 2015 Feb;205(3):1195-210. doi: 10.1111/nph.13121. Epub 2014 Oct 29.

15.

Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations.

Ercolano MR, Sacco A, Ferriello F, D'Alessandro R, Tononi P, Traini A, Barone A, Zago E, Chiusano ML, Buson G, Delledonne M, Frusciante L.

BMC Genomics. 2014 Feb 18;15:138. doi: 10.1186/1471-2164-15-138.

16.

Characterization of the glutathione S-transferase gene family through ESTs and expression analyses within common and pigmented cultivars of Citrus sinensis (L.) Osbeck.

Licciardello C, D'Agostino N, Traini A, Recupero GR, Frusciante L, Chiusano ML.

BMC Plant Biol. 2014 Feb 3;14:39. doi: 10.1186/1471-2229-14-39.

17.

Genome Microscale Heterogeneity among Wild Potatoes Revealed by Diversity Arrays Technology Marker Sequences.

Traini A, Iorizzo M, Mann H, Bradeen JM, Carputo D, Frusciante L, Chiusano ML.

Int J Genomics. 2013;2013:257218. doi: 10.1155/2013/257218. Epub 2013 May 8.

18.

Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana.

Sangiovanni M, Vigilante A, Chiusano ML.

Biology (Basel). 2013 Dec 9;2(4):1465-87. doi: 10.3390/biology2041465.

19.

The tomato genome sequence provides insights into fleshy fruit evolution.

Tomato Genome Consortium.

Nature. 2012 May 30;485(7400):635-41. doi: 10.1038/nature11119.

20.

Euchromatic and heterochromatic compositional properties emerging from the analysis of Solanum lycopersicum BAC sequences.

Di Filippo M, Traini A, D'Agostino N, Frusciante L, Chiusano ML.

Gene. 2012 May 10;499(1):176-81. doi: 10.1016/j.gene.2012.02.044. Epub 2012 Feb 26.

PMID:
22391094

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