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Items: 16

1.

TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes.

Waldl M, Thiel BC, Ochsenreiter R, Holzenleiter A, de Araujo Oliveira JV, Walter MEMT, Wolfinger MT, Stadler PF.

Genes (Basel). 2018 Jul 26;9(8). pii: E372. doi: 10.3390/genes9080372.

2.

Roles of Non-Coding RNA in Sugarcane-Microbe Interaction.

Thiebaut F, Rojas CA, Grativol C, Calixto EPDR, Motta MR, Ballesteros HGF, Peixoto B, de Lima BNS, Vieira LM, Walter ME, de Armas EM, Entenza JOP, Lifschitz S, Farinelli L, Hemerly AS, Ferreira PCG.

Noncoding RNA. 2017 Dec 20;3(4). pii: E25. doi: 10.3390/ncrna3040025.

3.

PlantRNA_Sniffer: A SVM-Based Workflow to Predict Long Intergenic Non-Coding RNAs in Plants.

Vieira LM, Grativol C, Thiebaut F, Carvalho TG, Hardoim PR, Hemerly A, Lifschitz S, Ferreira PCG, Walter MEMT.

Noncoding RNA. 2017 Mar 4;3(1). pii: E11. doi: 10.3390/ncrna3010011.

4.

A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts.

Schneider HW, Raiol T, Brigido MM, Walter MEMT, Stadler PF.

BMC Genomics. 2017 Oct 18;18(1):804. doi: 10.1186/s12864-017-4178-4.

5.

Evaluating the Cassandra NoSQL Database Approach for Genomic Data Persistency.

Aniceto R, Xavier R, Guimarães V, Hondo F, Holanda M, Walter ME, Lifschitz S.

Int J Genomics. 2015;2015:502795. doi: 10.1155/2015/502795. Epub 2015 Oct 19.

6.

Knowledge-based reasoning to annotate noncoding RNA using multi-agent system.

Arruda WC, Souza DS, Ralha CG, Walter ME, Raiol T, Brigido MM, Stadler PF.

J Bioinform Comput Biol. 2015 Dec;13(6):1550021. doi: 10.1142/S0219720015500213. Epub 2015 Jun 24.

PMID:
26223200
7.

Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring.

Raiol T, De-Souza MT, Oliveira JV, Silva HS, Orem JC, Cavalcante DA, Almeida NF, Telles GP, Setubal JC, Brigido MM, Torres FA, Stadler PS, Walter ME, Moraes LM.

Genome Announc. 2014 Oct 9;2(5). pii: e01027-14. doi: 10.1128/genomeA.01027-14.

8.

Provenance in bioinformatics workflows.

de Paula R, Holanda M, Gomes LS, Lifschitz S, Walter ME.

BMC Bioinformatics. 2013;14 Suppl 11:S6. doi: 10.1186/1471-2105-14-S11-S6. Epub 2013 Nov 4.

9.

Live phylogeny.

Telles GP, Almeida NF, Minghim R, Walter ME.

J Comput Biol. 2013 Jan;20(1):30-7. doi: 10.1089/cmb.2012.0219.

PMID:
23294270
10.

Clustering rfam 10.1: clans, families, and classes.

Lessa FA, Raiol T, Brigido MM, Martins Neto DS, Walter ME, Stadler PF.

Genes (Basel). 2012 Jul 5;3(3):378-90. doi: 10.3390/genes3030378.

11.

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.

Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M, Gujja S, Heiman DI, Henn MR, Kodira CD, León-Narváez H, Longo LV, Ma LJ, Malavazi I, Matsuo AL, Morais FV, Pereira M, Rodríguez-Brito S, Sakthikumar S, Salem-Izacc SM, Sykes SM, Teixeira MM, Vallejo MC, Walter ME, Yandava C, Young S, Zeng Q, Zucker J, Felipe MS, Goldman GH, Haas BJ, McEwen JG, Nino-Vega G, Puccia R, San-Blas G, Soares CM, Birren BW, Cuomo CA.

PLoS Genet. 2011 Oct;7(10):e1002345. doi: 10.1371/journal.pgen.1002345. Epub 2011 Oct 27.

12.

Transcriptome analysis of the Amazonian viper Bothrops atrox venom gland using expressed sequence tags (ESTs).

Neiva M, Arraes FB, de Souza JV, Rádis-Baptista G, Prieto da Silva AR, Walter ME, Brigido Mde M, Yamane T, López-Lozano JL, Astolfi-Filho S.

Toxicon. 2009 Mar 15;53(4):427-36. doi: 10.1016/j.toxicon.2009.01.006.

PMID:
19708221
13.

Overview and perspectives the transcriptome of Paracoccidioides brasiliensis.

Andrade RV, Da Silva SP, Torres FA, Poças-Fonseca MJ, Silva-Pereira I, Maranhão AQ, Campos EG, Moraes LM, Jesuíno RS, Pereira M, Soares CM, Walter ME, Carvalho MJ, Almeida NF, Brigido MM, Felipe MS.

Rev Iberoam Micol. 2005 Dec;22(4):203-12.

14.

A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.

Ribeiro Ede O, Zerlotini GG, Lopes IR, Ribeiro VB, Melo AC, Walter ME, Costa MM; BIOFOCO Network.

Genet Mol Res. 2005 Sep 30;4(3):590-8.

PMID:
16342044
15.

Bioinformatics of the Paracoccidioides brasiliensis EST Project.

Brígido MM, Walter ME, Oliveira AG, Inoue MK, Anjos DS, Sandes EF, Gondim JJ, Carvalho MJ, Almeida NF Jr, Felipe MS.

Genet Mol Res. 2005 Jun 30;4(2):203-15.

16.

Transcriptional profiles of the human pathogenic fungus Paracoccidioides brasiliensis in mycelium and yeast cells.

Felipe MS, Andrade RV, Arraes FB, Nicola AM, Maranhão AQ, Torres FA, Silva-Pereira I, Poças-Fonseca MJ, Campos EG, Moraes LM, Andrade PA, Tavares AH, Silva SS, Kyaw CM, Souza DP, Pereira M, Jesuíno RS, Andrade EV, Parente JA, Oliveira GS, Barbosa MS, Martins NF, Fachin AL, Cardoso RS, Passos GA, Almeida NF, Walter ME, Soares CM, Carvalho MJ, Brígido MM; PbGenome Network.

J Biol Chem. 2005 Jul 1;280(26):24706-14. Epub 2005 Apr 22.

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