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Items: 1 to 20 of 87

1.

Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids.

Romaniuk K, Styczynski M, Decewicz P, Buraczewska O, Uhrynowski W, Fondi M, Wolosiewicz M, Szuplewska M, Dziewit L.

Genes (Basel). 2019 Oct 28;10(11). pii: E850. doi: 10.3390/genes10110850.

2.

A Method for the Structure-Based, Genome-Wide Analysis of Bacterial Intergenic Sequences Identifies Shared Compositional and Functional Features.

Lenzini L, Di Patti F, Livi R, Fondi M, Fani R, Mengoni A.

Genes (Basel). 2019 Oct 22;10(10). pii: E834. doi: 10.3390/genes10100834.

3.

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards.

Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR 3rd, Ciofi C, Kwok PY, Pollard KS, Bruneau BG.

Nat Ecol Evol. 2019 Aug;3(8):1241-1252. doi: 10.1038/s41559-019-0945-8. Epub 2019 Jul 29.

PMID:
31358948
4.

The art of adapting to extreme environments: The model system Pseudoalteromonas.

Parrilli E, Tedesco P, Fondi M, Tutino ML, Lo Giudice A, de Pascale D, Fani R.

Phys Life Rev. 2019 Apr 4. pii: S1571-0645(19)30066-1. doi: 10.1016/j.plrev.2019.04.003. [Epub ahead of print] Review.

PMID:
31072789
5.

Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria.

Zoledowska S, Presta L, Fondi M, Decorosi F, Giovannetti L, Mengoni A, Lojkowska E.

Microorganisms. 2019 Apr 5;7(4). pii: E101. doi: 10.3390/microorganisms7040101.

6.

Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling.

diCenzo GC, Mengoni A, Fondi M.

ACS Synth Biol. 2019 Jan 18;8(1):158-169. doi: 10.1021/acssynbio.8b00432. Epub 2018 Dec 27.

PMID:
30525460
7.

Creation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti.

Checcucci A, diCenzo GC, Ghini V, Bazzicalupo M, Becker A, Decorosi F, Döhlemann J, Fagorzi C, Finan TM, Fondi M, Luchinat C, Turano P, Vignolini T, Viti C, Mengoni A.

ACS Synth Biol. 2018 Oct 19;7(10):2365-2378. doi: 10.1021/acssynbio.8b00158. Epub 2018 Oct 3.

PMID:
30223644
8.

Multidisciplinary approaches for studying rhizobium-legume symbioses.

diCenzo GC, Zamani M, Checcucci A, Fondi M, Griffitts JS, Finan TM, Mengoni A.

Can J Microbiol. 2019 Jan;65(1):1-33. doi: 10.1139/cjm-2018-0377. Epub 2018 Sep 11. Review.

9.

Antagonism and antibiotic resistance drive a species-specific plant microbiota differentiation in Echinacea spp.

Maggini V, Miceli E, Fagorzi C, Maida I, Fondi M, Perrin E, Mengoni A, Bogani P, Chiellini C, Mocali S, Fabiani A, Decorosi F, Giovannetti L, Firenzuoli F, Fani R.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy118.

PMID:
29912319
10.

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti.

diCenzo GC, Benedict AB, Fondi M, Walker GC, Finan TM, Mengoni A, Griffitts JS.

PLoS Genet. 2018 Apr 19;14(4):e1007357. doi: 10.1371/journal.pgen.1007357. eCollection 2018 Apr.

11.

G4PromFinder: an algorithm for predicting transcription promoters in GC-rich bacterial genomes based on AT-rich elements and G-quadruplex motifs.

Di Salvo M, Pinatel E, Talà A, Fondi M, Peano C, Alifano P.

BMC Bioinformatics. 2018 Feb 6;19(1):36. doi: 10.1186/s12859-018-2049-x.

12.

Modelling the Kinetic Response to Nutrient Fluctuations.

Fondi M.

Trends Microbiol. 2018 Jan;26(1):4-5. doi: 10.1016/j.tim.2017.11.009. Epub 2017 Nov 24.

PMID:
29239769
13.

Template-Assisted Metabolic Reconstruction and Assembly of Hybrid Bacterial Models.

Vignolini T, Mengoni A, Fondi M.

Methods Mol Biol. 2018;1716:177-196. doi: 10.1007/978-1-4939-7528-0_8.

PMID:
29222754
14.

Subfunctionalization influences the expansion of bacterial multidrug antibiotic resistance.

Perrin E, Fondi M, Bosi E, Mengoni A, Buroni S, Scoffone VC, Valvano M, Fani R.

BMC Genomics. 2017 Oct 30;18(1):834. doi: 10.1186/s12864-017-4222-4.

15.

Perspectives and Challenges in Microbial Communities Metabolic Modeling.

Bosi E, Bacci G, Mengoni A, Fondi M.

Front Genet. 2017 Jun 21;8:88. doi: 10.3389/fgene.2017.00088. eCollection 2017.

16.

Constraint-based metabolic modelling of marine microbes and communities.

Fondi M, Fani R.

Mar Genomics. 2017 Aug;34:1-10. doi: 10.1016/j.margen.2017.06.003. Epub 2017 Jun 23. Review.

PMID:
28648476
17.

New Genome Sequence of an Echinaceapurpurea Endophyte, Arthrobacter sp. Strain EpSL27, Able To Inhibit Human-Opportunistic Pathogens.

Miceli E, Presta L, Maggini V, Fondi M, Bosi E, Chiellini C, Fagorzi C, Bogani P, Di Pilato V, Rossolini GM, Mengoni A, Firenzuoli F, Perrin E, Fani R.

Genome Announc. 2017 Jun 22;5(25). pii: e00565-17. doi: 10.1128/genomeA.00565-17.

18.

Constraint-based modeling identifies new putative targets to fight colistin-resistant A. baumannii infections.

Presta L, Bosi E, Mansouri L, Dijkshoorn L, Fani R, Fondi M.

Sci Rep. 2017 Jun 16;7(1):3706. doi: 10.1038/s41598-017-03416-2.

19.

Time-Resolved Transcriptomics and Constraint-Based Modeling Identify System-Level Metabolic Features and Overexpression Targets to Increase Spiramycin Production in Streptomyces ambofaciens.

Fondi M, Pinatel E, Talà A, Damiano F, Consolandi C, Mattorre B, Fico D, Testini M, De Benedetto GE, Siculella L, De Bellis G, Alifano P, Peano C.

Front Microbiol. 2017 May 12;8:835. doi: 10.3389/fmicb.2017.00835. eCollection 2017.

20.

Draft Genome Sequence of Pseudomonas sp. Strain Ep R1 Isolated from Echinacea purpurea Roots and Effective in the Growth Inhibition of Human Opportunistic Pathogens Belonging to the Burkholderia cepacia Complex.

Maggini V, Presta L, Miceli E, Fondi M, Bosi E, Chiellini C, Fagorzi C, Bogani P, Di Pilato V, Rossolini GM, Mengoni A, Firenzuoli F, Perrin E, Fani R.

Genome Announc. 2017 May 18;5(20). pii: e00351-17. doi: 10.1128/genomeA.00351-17.

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