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Items: 1 to 20 of 29


Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model.

Kjellin J, Pränting M, Bach F, Vaid R, Edelbroek B, Li Z, Hoeppner MP, Grabherr M, Isberg RR, Hagedorn M, Söderbom F.

BMC Genomics. 2019 Dec 10;20(1):961. doi: 10.1186/s12864-019-6269-x.


Assembly and Analysis of the Genome Sequence of the Yeast Brettanomyces naardenensis CBS 7540.

Tiukova IA, Jiang H, Dainat J, Hoeppner MP, Lantz H, Piskur J, Sandgren M, Nielsen J, Gu Z, Passoth V.

Microorganisms. 2019 Oct 26;7(11). pii: E489. doi: 10.3390/microorganisms7110489.


The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans.

Zimmermann J, Obeng N, Yang W, Pees B, Petersen C, Waschina S, Kissoyan KA, Aidley J, Hoeppner MP, Bunk B, Spröer C, Leippe M, Dierking K, Kaleta C, Schulenburg H.

ISME J. 2020 Jan;14(1):26-38. doi: 10.1038/s41396-019-0504-y. Epub 2019 Sep 4.


First known case of paediatric inflammatory bowel disease in a western lowland gorilla may be linked to a familial mutation in the MEFV gene.

Petersen BS, Bokemeyer B, Wenker C, Hoby S, Baumgartner K, Will H, Hoeppner MP, Schreiber S, Mecklenburg I, Franke A.

Gut. 2019 Jun 21. pii: gutjnl-2019-319051. doi: 10.1136/gutjnl-2019-319051. [Epub ahead of print] No abstract available.


Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis.

Tiukova IA, Pettersson ME, Hoeppner MP, Olsen RA, Käller M, Nielsen J, Dainat J, Lantz H, Söderberg J, Passoth V.

PLoS One. 2019 May 1;14(5):e0215077. doi: 10.1371/journal.pone.0215077. eCollection 2019.


VarWatch-A stand-alone software tool for variant matching.

Fredrich B, Schmöhl M, Junge O, Gundlach S, Ellinghaus D, Pfeufer A, Bettecken T, Siddiqui R, Franke A, Wienker TF, Hoeppner MP, Krawczak M.

PLoS One. 2019 Apr 25;14(4):e0215618. doi: 10.1371/journal.pone.0215618. eCollection 2019.


Reference Genomes from Distantly Related Species Can Be Used for Discovery of Single Nucleotide Polymorphisms to Inform Conservation Management.

Galla SJ, Forsdick NJ, Brown L, Hoeppner MP, Knapp M, Maloney RF, Moraga R, Santure AW, Steeves TE.

Genes (Basel). 2018 Dec 22;10(1). pii: E9. doi: 10.3390/genes10010009.


Differential expression of immune receptors in two marine sponges upon exposure to microbial-associated molecular patterns.

Pita L, Hoeppner MP, Ribes M, Hentschel U.

Sci Rep. 2018 Oct 31;8(1):16081. doi: 10.1038/s41598-018-34330-w.


Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.

Lin YC, Wang J, Delhomme N, Schiffthaler B, Sundström G, Zuccolo A, Nystedt B, Hvidsten TR, de la Torre A, Cossu RM, Hoeppner MP, Lantz H, Scofield DG, Zamani N, Johansson A, Mannapperuma C, Robinson KM, Mähler N, Leitch IJ, Pellicer J, Park EJ, Van Montagu M, Van de Peer Y, Grabherr M, Jansson S, Ingvarsson PK, Street NR.

Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):E10970-E10978. doi: 10.1073/pnas.1801437115. Epub 2018 Oct 29.


Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum.

Liao Z, Kjellin J, Hoeppner MP, Grabherr M, Söderbom F.

RNA Biol. 2018;15(7):937-954. doi: 10.1080/15476286.2018.1481697. Epub 2018 Aug 21. Update in: RNA Biol. 2018;15(7):iii.


Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades.

Kupczok A, Neve H, Huang KD, Hoeppner MP, Heller KJ, Franz CMAP, Dagan T.

Mol Biol Evol. 2018 May 1;35(5):1147-1159. doi: 10.1093/molbev/msy027.


An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.

Hoeppner MP, Denisenko E, Gardner PP, Schmeier S, Poole AM.

Mol Biol Evol. 2018 Jun 1;35(6):1451-1462. doi: 10.1093/molbev/msy046.


A comprehensive, cell specific microRNA catalogue of human peripheral blood.

Juzenas S, Venkatesh G, Hübenthal M, Hoeppner MP, Du ZG, Paulsen M, Rosenstiel P, Senger P, Hofmann-Apitius M, Keller A, Kupcinskas L, Franke A, Hemmrich-Stanisak G.

Nucleic Acids Res. 2017 Sep 19;45(16):9290-9301. doi: 10.1093/nar/gkx706.


Genome Sequence of Klebsiella pneumoniae Bacteriophage PMBT1 Isolated from Raw Sewage.

Koberg S, Brinks E, Fiedler G, Hüsing C, Cho GS, Hoeppner MP, Heller KJ, Neve H, Franz CM.

Genome Announc. 2017 Feb 23;5(8). pii: e00914-16. doi: 10.1128/genomeA.00914-16.


Opportunities and challenges of whole-genome and -exome sequencing.

Petersen BS, Fredrich B, Hoeppner MP, Ellinghaus D, Franke A.

BMC Genet. 2017 Feb 14;18(1):14. doi: 10.1186/s12863-017-0479-5. Review.


Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. No abstract available.


Coordinated Changes in Gene Expression Throughout Encystation of Giardia intestinalis.

Einarsson E, Troell K, Hoeppner MP, Grabherr M, Ribacke U, Svärd SG.

PLoS Negl Trop Dis. 2016 Mar 25;10(3):e0004571. doi: 10.1371/journal.pntd.0004571. eCollection 2016 Mar.


Positive Selection or Free to Vary? Assessing the Functional Significance of Sequence Change Using Molecular Dynamics.

Allison JR, Lechner M, Hoeppner MP, Poole AM.

PLoS One. 2016 Feb 12;11(2):e0147619. doi: 10.1371/journal.pone.0147619. eCollection 2016.


Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. doi: 10.1007/s00239-015-9720-x. Epub 2015 Nov 18.


Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).

Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L.

Nat Genet. 2016 Jan;48(1):84-8. doi: 10.1038/ng.3430. Epub 2015 Nov 16.


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