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Items: 1 to 20 of 157

1.

Investigating the energy crisis in Alzheimer disease using transcriptome study.

Dharshini SAP, Taguchi YH, Gromiha MM.

Sci Rep. 2019 Dec 6;9(1):18509. doi: 10.1038/s41598-019-54782-y.

2.

ProAffiMuSeq: Sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification.

Jemimah S, Sekijima M, Gromiha MM.

Bioinformatics. 2019 Nov 12. pii: btz829. doi: 10.1093/bioinformatics/btz829. [Epub ahead of print]

PMID:
31713585
3.

Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma.

Sharma A, Biswas A, Liu H, Sen S, Paruchuri A, Katsonis P, Lichtarge O, Chand Dakal T, Maulik U, Gromiha MM, Bandyopadhyay S, Ludwig M, Holz FG, Loeffler KU, Herwig-Carl MC.

Cancers (Basel). 2019 Oct 19;11(10). pii: E1600. doi: 10.3390/cancers11101600.

4.

AggreRATE-Pred: A mathematical model for the prediction of change in aggregation rate upon point mutation.

Rawat P, Prabakaran R, Kumar S, Gromiha MM.

Bioinformatics. 2019 Oct 10. pii: btz764. doi: 10.1093/bioinformatics/btz764. [Epub ahead of print]

PMID:
31599925
5.

Design of fluorinated sialic acid analog inhibitor to H5 hemagglutinin of H5N1 influenza virus through molecular dynamics simulation study.

Jeyaram RA, Radha CA, Gromiha MM, Veluraja K.

J Biomol Struct Dyn. 2019 Oct 26:1-10. doi: 10.1080/07391102.2019.1677500. [Epub ahead of print]

PMID:
31594458
6.

Seq2Feature: a comprehensive web-based feature extraction tool.

Nikam R, Gromiha MM.

Bioinformatics. 2019 Nov 1;35(22):4797-4799. doi: 10.1093/bioinformatics/btz432.

PMID:
31135038
7.

Amarogentin, a secoiridoid glycoside, activates AMP- activated protein kinase (AMPK) to exert beneficial vasculo-metabolic effects.

Potunuru UR, Priya KV, Varsha MKNS, Mehta N, Chandel S, Manoj N, Raman T, Ramar M, Gromiha MM, Dixit M.

Biochim Biophys Acta Gen Subj. 2019 Aug;1863(8):1270-1282. doi: 10.1016/j.bbagen.2019.05.008. Epub 2019 May 22.

PMID:
31125678
8.

Statistical analysis of disease-causing and neutral mutations in human membrane proteins.

Kulandaisamy A, Priya SB, Sakthivel R, Frishman D, Gromiha MM.

Proteins. 2019 Jun;87(6):452-466. doi: 10.1002/prot.25667. Epub 2019 Feb 25.

PMID:
30714211
9.

HuVarBase: A human variant database with comprehensive information at gene and protein levels.

Ganesan K, Kulandaisamy A, Binny Priya S, Gromiha MM.

PLoS One. 2019 Jan 31;14(1):e0210475. doi: 10.1371/journal.pone.0210475. eCollection 2019.

10.

Molecular dynamics simulation studies on influenza A virus H5N1 complexed with sialic acid and fluorinated sialic acid.

Jeyaram RA, Priyadarzini TRK, Anu Radha C, Siva Shanmugam NR, Ramakrishnan C, Gromiha MM, Veluraja K.

J Biomol Struct Dyn. 2019 Nov;37(18):4813-4824. doi: 10.1080/07391102.2019.1568304. Epub 2019 Feb 22.

PMID:
30686127
11.

Drug repositioning for dengue haemorrhagic fever by integrating multiple omics analyses.

Amemiya T, Gromiha MM, Horimoto K, Fukui K.

Sci Rep. 2019 Jan 24;9(1):523. doi: 10.1038/s41598-018-36636-1.

12.

Structural insights into the aggregation mechanism of huntingtin exon 1 protein fragment with different polyQ-lengths.

Priya SB, Gromiha MM.

J Cell Biochem. 2019 Jun;120(6):10519-10529. doi: 10.1002/jcb.28338. Epub 2019 Jan 22.

PMID:
30672003
13.

Identification and Analysis of Key Residues in Protein-RNA Complexes.

Kulandaisamy A, Srivastava A, Kumar P, Nagarajan R, Priya SB, Gromiha MM.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Sep-Oct;15(5):1436-1444. doi: 10.1109/TCBB.2018.2834387. Epub 2018 May 14.

PMID:
29993582
14.

Deciphering RNA-Recognition Patterns of Intrinsically Disordered Proteins.

Srivastava A, Ahmad S, Gromiha MM.

Int J Mol Sci. 2018 May 29;19(6). pii: E1595. doi: 10.3390/ijms19061595.

15.

Identification and Analysis of Key Residues Involved in Folding and Binding of Protein-carbohydrate Complexes.

Shanmugam NRS, Selvin JFA, Veluraja K, Gromiha MM.

Protein Pept Lett. 2018;25(4):379-389. doi: 10.2174/0929866525666180221122529.

PMID:
29473490
16.

MutHTP: mutations in human transmembrane proteins.

Kulandaisamy A, Binny Priya S, Sakthivel R, Tarnovskaya S, Bizin I, Hönigschmid P, Frishman D, Gromiha MM.

Bioinformatics. 2018 Jul 1;34(13):2325-2326. doi: 10.1093/bioinformatics/bty054.

PMID:
29401218
17.

Exploring additivity effects of double mutations on the binding affinity of protein-protein complexes.

Jemimah S, Gromiha MM.

Proteins. 2018 May;86(5):536-547. doi: 10.1002/prot.25472. Epub 2018 Feb 16.

PMID:
29383762
18.

Structural basis of flavonoids as dengue polymerase inhibitors: insights from QSAR and docking studies.

Anusuya S, Gromiha MM.

J Biomol Struct Dyn. 2019 Jan;37(1):104-115. doi: 10.1080/07391102.2017.1419146. Epub 2017 Dec 29.

PMID:
29254451
19.

Dissecting and analyzing key residues in protein-DNA complexes.

Kulandaisamy A, Srivastava A, Nagarajan R, Gromiha MM.

J Mol Recognit. 2018 Apr;31(4). doi: 10.1002/jmr.2692. Epub 2017 Dec 12.

PMID:
29230895
20.

Investigating mutation-specific biological activities of small molecules using quantitative structure-activity relationship for epidermal growth factor receptor in cancer.

Anoosha P, Sakthivel R, Gromiha MM.

Mutat Res. 2017 Dec;806:19-26. doi: 10.1016/j.mrfmmm.2017.08.003. Epub 2017 Aug 26.

PMID:
28938109

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