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Items: 1 to 20 of 53

1.

Structural Basis of Ca2+-Dependent Self-Processing Activity of Repeat-in-Toxin Proteins.

Kuban V, Macek P, Hritz J, Nechvatalova K, Nedbalcova K, Faldyna M, Sebo P, Zidek L, Bumba L.

mBio. 2020 Mar 17;11(2). pii: e00226-20. doi: 10.1128/mBio.00226-20.

2.

Boosting the resolution of low-field [Formula: see text] relaxation experiments on intrinsically disordered proteins with triple-resonance NMR.

Jaseňáková Z, Zapletal V, Padrta P, Zachrdla M, Bolik-Coulon N, Marquardsen T, Tyburn JM, Žídek L, Ferrage F, Kadeřávek P.

J Biomol NMR. 2020 Mar;74(2-3):139-145. doi: 10.1007/s10858-019-00298-6. Epub 2020 Jan 20.

PMID:
31960224
3.

Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase.

Kubáň V, Srb P, Štégnerová H, Padrta P, Zachrdla M, Jaseňáková Z, Šanderová H, Vítovská D, Krásný L, Koval' T, Dohnálek J, Ziemska-Legiecka J, Grynberg M, Jarnot P, Gruca A, Jensen MR, Blackledge M, Žídek L.

J Am Chem Soc. 2019 Oct 23;141(42):16817-16828. doi: 10.1021/jacs.9b07837. Epub 2019 Oct 10.

PMID:
31550880
4.

Structure and Functions of Microtubule Associated Proteins Tau and MAP2c: Similarities and Differences.

Melková K, Zapletal V, Narasimhan S, Jansen S, Hritz J, Škrabana R, Zweckstetter M, Ringkjøbing Jensen M, Blackledge M, Žídek L.

Biomolecules. 2019 Mar 16;9(3). pii: E105. doi: 10.3390/biom9030105. Review.

5.

Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics.

Melková K, Zapletal V, Jansen S, Nomilner E, Zachrdla M, Hritz J, Nováček J, Zweckstetter M, Jensen MR, Blackledge M, Žídek L.

J Biol Chem. 2018 Aug 24;293(34):13297-13309. doi: 10.1074/jbc.RA118.001769. Epub 2018 Jun 20.

6.

Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants.

Špačková N, Trošanová Z, Šebesta F, Jansen S, Burda JV, Srb P, Zachrdla M, Žídek L, Kozelka J.

Phys Chem Chem Phys. 2018 May 9;20(18):12664-12677. doi: 10.1039/c7cp08623g.

PMID:
29696277
7.

Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Srb P, Nováček J, Kadeřávek P, Rabatinová A, Krásný L, Žídková J, Bobálová J, Sklenář V, Žídek L.

J Biomol NMR. 2017 Nov;69(3):133-146. doi: 10.1007/s10858-017-0138-1. Epub 2017 Oct 25.

PMID:
29071460
8.

Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.

Otrusinová O, Demo G, Padrta P, Jaseňáková Z, Pekárová B, Gelová Z, Szmitkowska A, Kadeřávek P, Jansen S, Zachrdla M, Klumpler T, Marek J, Hritz J, Janda L, Iwaï H, Wimmerová M, Hejátko J, Žídek L.

J Biol Chem. 2017 Oct 20;292(42):17525-17540. doi: 10.1074/jbc.M117.790212. Epub 2017 Aug 31.

9.

Role of SH3b binding domain in a natural deletion mutant of Kayvirus endolysin LysF1 with a broad range of lytic activity.

Benešík M, Nováček J, Janda L, Dopitová R, Pernisová M, Melková K, Tišáková L, Doškař J, Žídek L, Hejátko J, Pantůček R.

Virus Genes. 2018 Feb;54(1):130-139. doi: 10.1007/s11262-017-1507-2. Epub 2017 Aug 29.

PMID:
28852930
10.

Conformational Entropy from Slowly Relaxing Local Structure Analysis of 15N-H Relaxation in Proteins: Application to Pheromone Binding to MUP-I in the 283-308 K Temperature Range.

Žídek L, Meirovitch E.

J Phys Chem B. 2017 Sep 21;121(37):8684-8692. doi: 10.1021/acs.jpcb.7b06049. Epub 2017 Sep 8.

PMID:
28825833
11.

Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3ζ-binding sites reveals key differences between MAP2c and its homolog Tau.

Jansen S, Melková K, Trošanová Z, Hanáková K, Zachrdla M, Nováček J, Župa E, Zdráhal Z, Hritz J, Žídek L.

J Biol Chem. 2017 Jun 16;292(24):10316. doi: 10.1074/jbc.A116.771097. No abstract available.

12.

Solution structure of domain 1.1 of the σA factor from Bacillus subtilis is preformed for binding to the RNA polymerase core.

Zachrdla M, Padrta P, Rabatinová A, Šanderová H, Barvík I, Krásný L, Žídek L.

J Biol Chem. 2017 Jul 14;292(28):11610-11617. doi: 10.1074/jbc.M117.784074. Epub 2017 May 24.

13.

Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3ζ-binding sites reveals key differences between MAP2c and its homolog Tau.

Jansen S, Melková K, Trošanová Z, Hanáková K, Zachrdla M, Nováček J, Župa E, Zdráhal Z, Hritz J, Žídek L.

J Biol Chem. 2017 Apr 21;292(16):6715-6727. doi: 10.1074/jbc.M116.771097. Epub 2017 Mar 3. Erratum in: J Biol Chem. 2017 Jun 16;292(24):10316.

14.

The Eighth Central European Conference "Chemistry towards Biology": Snapshot.

Perczel A, Atanasov AG, Sklenář V, Nováček J, Papoušková V, Kadeřávek P, Žídek L, Kozłowski H, Wątły J, Hecel A, Kołkowska P, Koča J, Svobodová-Vařeková R, Pravda L, Sehnal D, Horský V, Geidl S, Enriz RD, Matějka P, Jeništová A, Dendisová M, Kokaislová A, Weissig V, Olsen M, Coffey A, Ajuebor J, Keary R, Sanz-Gaitero M, van Raaij MJ, McAuliffe O, Waltenberger B, Mocan A, Šmejkal K, Heiss EH, Diederich M, Musioł R, Košmrlj J, Polański J, Jampílek J.

Molecules. 2016 Oct 17;21(10). pii: E1381.

15.

Spectral density mapping at multiple magnetic fields suitable for (13)C NMR relaxation studies.

Kadeřávek P, Zapletal V, Fiala R, Srb P, Padrta P, Přecechtělová JP, Šoltésová M, Kowalewski J, Widmalm G, Chmelík J, Sklenář V, Žídek L.

J Magn Reson. 2016 May;266:23-40. doi: 10.1016/j.jmr.2016.02.016. Epub 2016 Mar 8.

PMID:
27003380
16.

The influence of Mg2+ coordination on 13C and 15N chemical shifts in CKI1RD protein domain from experiment and molecular dynamics/density functional theory calculations.

Vícha J, Babinský M, Demo G, Otrusinová O, Jansen S, Pekárová B, Žídek L, Munzarová ML.

Proteins. 2016 May;84(5):686-99. doi: 10.1002/prot.25019. Epub 2016 Mar 10.

PMID:
26879585
17.

Structural Aspects of Multistep Phosphorelay-Mediated Signaling in Plants.

Pekárová B, Szmitkowska A, Dopitová R, Degtjarik O, Žídek L, Hejátko J.

Mol Plant. 2016 Jan 4;9(1):71-85. doi: 10.1016/j.molp.2015.11.008. Epub 2015 Nov 26. Review.

18.

Cross-correlated relaxation measurements under adiabatic sweeps: determination of local order in proteins.

Kadeřávek P, Grutsch S, Salvi N, Tollinger M, Žídek L, Bodenhausen G, Ferrage F.

J Biomol NMR. 2015 Dec;63(4):353-365. doi: 10.1007/s10858-015-9994-8. Epub 2015 Oct 28.

19.

NMR assignment of intrinsically disordered self-processing module of the FrpC protein of Neisseria meningitidis.

Kubáň V, Nováček J, Bumba L, Žídek L.

Biomol NMR Assign. 2015 Oct;9(2):435-40. doi: 10.1007/s12104-015-9625-z. Epub 2015 Jul 3.

PMID:
26138689
20.

Conformational dynamics and antigenicity in the disordered malaria antigen merozoite surface protein 2.

MacRaild CA, Zachrdla M, Andrew D, Krishnarjuna B, Nováček J, Žídek L, Sklenář V, Richards JS, Beeson JG, Anders RF, Norton RS.

PLoS One. 2015 Mar 5;10(3):e0119899. doi: 10.1371/journal.pone.0119899. eCollection 2015.

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