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Items: 1 to 20 of 61

1.

Y-chromosome and Surname Analyses for Reconstructing Past Population Structures: The Sardinian Population as a Test Case.

Grugni V, Raveane A, Colombo G, Nici C, Crobu F, Ongaro L, Battaglia V, Sanna D, Al-Zahery N, Fiorani O, Lisa A, Ferretti L, Achilli A, Olivieri A, Francalacci P, Piazza A, Torroni A, Semino O.

Int J Mol Sci. 2019 Nov 16;20(22). pii: E5763. doi: 10.3390/ijms20225763.

2.

Evolutionary and functional impact of common polymorphic inversions in the human genome.

Giner-Delgado C, Villatoro S, Lerga-Jaso J, Gayà-Vidal M, Oliva M, Castellano D, Pantano L, Bitarello BD, Izquierdo D, Noguera I, Olalde I, Delprat A, Blancher A, Lalueza-Fox C, Esko T, O'Reilly PF, Andrés AM, Ferretti L, Puig M, Cáceres M.

Nat Commun. 2019 Sep 17;10(1):4222. doi: 10.1038/s41467-019-12173-x.

3.

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data.

Ferretti L, Tennakoon C, Silesian A, Ribeca GFA.

Genes (Basel). 2019 Jul 25;10(8). pii: E561. doi: 10.3390/genes10080561.

4.

Persistent Infection of African Buffalo (Syncerus caffer) with Foot-and-Mouth Disease Virus: Limited Viral Evolution and No Evidence of Antibody Neutralization Escape.

Cortey M, Ferretti L, Pérez-Martín E, Zhang F, de Klerk-Lorist LM, Scott K, Freimanis G, Seago J, Ribeca P, van Schalkwyk L, Juleff ND, Maree FF, Charleston B.

J Virol. 2019 Jul 17;93(15). pii: e00563-19. doi: 10.1128/JVI.00563-19. Print 2019 Aug 1.

PMID:
31092573
5.

PRDM9 Diversity at Fine Geographical Scale Reveals Contrasting Evolutionary Patterns and Functional Constraints in Natural Populations of House Mice.

Vara C, Capilla L, Ferretti L, Ledda A, Sánchez-Guillén RA, Gabriel SI, Albert-Lizandra G, Florit-Sabater B, Bello-Rodríguez J, Ventura J, Searle JB, Mathias ML, Ruiz-Herrera A.

Mol Biol Evol. 2019 Aug 1;36(8):1686-1700. doi: 10.1093/molbev/msz091.

6.

Analysis of the human Y-chromosome haplogroup Q characterizes ancient population movements in Eurasia and the Americas.

Grugni V, Raveane A, Ongaro L, Battaglia V, Trombetta B, Colombo G, Capodiferro MR, Olivieri A, Achilli A, Perego UA, Motta J, Tribaldos M, Woodward SR, Ferretti L, Cruciani F, Torroni A, Semino O.

BMC Biol. 2019 Jan 24;17(1):3. doi: 10.1186/s12915-018-0622-4.

7.

The Site Frequency/Dosage Spectrum of Autopolyploid Populations.

Ferretti L, Ribeca P, Ramos-Onsins SE.

Front Genet. 2018 Oct 23;9:480. doi: 10.3389/fgene.2018.00480. eCollection 2018.

8.

Stilbene biosynthesis and gene expression in response to methyl jasmonate and continuous light treatment in Vitis vinifera cv. Malvasia del Lazio and Vitis rupestris Du Lot cell cultures.

Donati L, Ferretti L, Frallicciardi J, Rosciani R, Valletta A, Pasqua G.

Physiol Plant. 2019 Jun;166(2):646-662. doi: 10.1111/ppl.12813. Epub 2018 Sep 10.

PMID:
30091254
9.

Evolutionary constraints in fitness landscapes.

Ferretti L, Weinreich D, Tajima F, Achaz G.

Heredity (Edinb). 2018 Nov;121(5):466-481. doi: 10.1038/s41437-018-0110-1. Epub 2018 Jul 11.

10.

The neutral frequency spectrum of linked sites.

Ferretti L, Klassmann A, Raineri E, Ramos-Onsins SE, Wiehe T, Achaz G.

Theor Popul Biol. 2018 Sep;123:70-79. doi: 10.1016/j.tpb.2018.06.001. Epub 2018 Jun 28.

PMID:
29964061
11.

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome.

Ferretti L, Di Nardo A, Singer B, Lasecka-Dykes L, Logan G, Wright CF, Pérez-Martín E, King DP, Tuthill TJ, Ribeca P.

Viruses. 2018 Apr 25;10(5). pii: E221. doi: 10.3390/v10050221.

12.

Mitochondrial DNA variants of Podolian cattle breeds testify for a dual maternal origin.

Di Lorenzo P, Lancioni H, Ceccobelli S, Colli L, Cardinali I, Karsli T, Capodiferro MR, Sahin E, Ferretti L, Ajmone Marsan P, Sarti FM, Lasagna E, Panella F, Achilli A.

PLoS One. 2018 Feb 20;13(2):e0192567. doi: 10.1371/journal.pone.0192567. eCollection 2018.

13.

Reconstructing the genetic history of Italians: new insights from a male (Y-chromosome) perspective.

Grugni V, Raveane A, Mattioli F, Battaglia V, Sala C, Toniolo D, Ferretti L, Gardella R, Achilli A, Olivieri A, Torroni A, Passarino G, Semino O.

Ann Hum Biol. 2018 Feb;45(1):44-56. doi: 10.1080/03014460.2017.1409801.

PMID:
29382284
14.

The Paleo-Indian Entry into South America According to Mitogenomes.

Brandini S, Bergamaschi P, Cerna MF, Gandini F, Bastaroli F, Bertolini E, Cereda C, Ferretti L, Gómez-Carballa A, Battaglia V, Salas A, Semino O, Achilli A, Olivieri A, Torroni A.

Mol Biol Evol. 2018 Feb 1;35(2):299-311. doi: 10.1093/molbev/msx267.

15.

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests.

Ferretti L, Ledda A, Wiehe T, Achaz G, Ramos-Onsins SE.

Genetics. 2017 Sep;207(1):229-240. doi: 10.1534/genetics.116.188763. Epub 2017 Jul 5.

16.

Exploring the Role of Theory of Mind in Moral Judgment: The Case of Children with Autism Spectrum Disorder.

Fadda R, Parisi M, Ferretti L, Saba G, Foscoliano M, Salvago A, Doneddu G.

Front Psychol. 2016 Apr 18;7:523. doi: 10.3389/fpsyg.2016.00523. eCollection 2016.

17.

Mapping human dispersals into the Horn of Africa from Arabian Ice Age refugia using mitogenomes.

Gandini F, Achilli A, Pala M, Bodner M, Brandini S, Huber G, Egyed B, Ferretti L, Gómez-Carballa A, Salas A, Scozzari R, Cruciani F, Coppa A, Parson W, Semino O, Soares P, Torroni A, Richards MB, Olivieri A.

Sci Rep. 2016 May 5;6:25472. doi: 10.1038/srep25472.

18.

Survey of uniparental genetic markers in the Maltese cattle breed reveals a significant founder effect but does not indicate local domestication.

Lancioni H, Di Lorenzo P, Cardinali I, Ceccobelli S, Capodiferro MR, Fichera A, Grugni V, Semino O, Ferretti L, Gruppetta A, Attard G, Achilli A, Lasagna E.

Anim Genet. 2016 Apr;47(2):267-9. doi: 10.1111/age.12408. Epub 2016 Feb 11. No abstract available.

PMID:
26868928
19.

Measuring epistasis in fitness landscapes: The correlation of fitness effects of mutations.

Ferretti L, Schmiegelt B, Weinreich D, Yamauchi A, Kobayashi Y, Tajima F, Achaz G.

J Theor Biol. 2016 May 7;396:132-43. doi: 10.1016/j.jtbi.2016.01.037. Epub 2016 Feb 20.

PMID:
26854875
20.

Dosage Compensation in the African Malaria Mosquito Anopheles gambiae.

Rose G, Krzywinska E, Kim J, Revuelta L, Ferretti L, Krzywinski J.

Genome Biol Evol. 2016 Jan 18;8(2):411-25. doi: 10.1093/gbe/evw004.

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