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Items: 1 to 20 of 101

1.

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra.

Liu Y, Mrzic A, Meysman P, De Vijlder T, Romijn EP, Valkenborg D, Bittremieux W, Laukens K.

PLoS One. 2020 Jan 16;15(1):e0226770. doi: 10.1371/journal.pone.0226770. eCollection 2020.

2.

Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires.

Gielis S, Moris P, Bittremieux W, De Neuter N, Ogunjimi B, Laukens K, Meysman P.

Front Immunol. 2019 Nov 29;10:2820. doi: 10.3389/fimmu.2019.02820. eCollection 2019.

3.

Visualizing the agreement of peptide assignments between different search engines.

Agten A, Van Houtven J, Askenazi M, Burzykowski T, Laukens K, Valkenborg D.

J Mass Spectrom. 2019 Nov 12. doi: 10.1002/jms.4471. [Epub ahead of print]

PMID:
31713933
4.

Exposure of HepaRG Cells to Sodium Saccharin Underpins the Importance of Including Non-Hepatotoxic Compounds When Investigating Toxicological Modes of Action Using Metabolomics.

Cuykx M, Beirnaert C, Rodrigues RM, Laukens K, Vanhaecke T, Covaci A.

Metabolites. 2019 Nov 4;9(11). pii: E265. doi: 10.3390/metabo9110265.

5.

Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units.

Bittremieux W, Laukens K, Noble WS.

J Proteome Res. 2019 Oct 4;18(10):3792-3799. doi: 10.1021/acs.jproteome.9b00291. Epub 2019 Aug 30.

PMID:
31448616
6.

Diagnosing enterovirus meningitis via blood transcriptomics: an alternative for lumbar puncture?

Bartholomeus E, De Neuter N, Lemay A, Pattyn L, Tuerlinckx D, Weynants D, Van Lede K, van Berlaer G, Bulckaert D, Boiy T, Vander Auwera A, Raes M, Van der Linden D, Verhelst H, Van Steijn S, Jonckheer T, Dehoorne J, Joos R, Jansens H, Suls A, Van Damme P, Laukens K, Mortier G, Meysman P, Ogunjimi B.

J Transl Med. 2019 Aug 23;17(1):282. doi: 10.1186/s12967-019-2037-6.

7.

Untargeted liquid chromatography-mass spectrometry metabolomics to assess drug-induced cholestatic features in HepaRGĀ® cells.

Cuykx M, Beirnaert C, Rodrigues RM, Laukens K, Vanhaecke T, Covaci A.

Toxicol Appl Pharmacol. 2019 Sep 15;379:114666. doi: 10.1016/j.taap.2019.114666. Epub 2019 Jul 16.

PMID:
31323262
8.

MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics.

Lermyte F, Dittwald P, Claesen J, Baggerman G, Sobott F, O'Connor PB, Laukens K, Hooyberghs J, Gambin A, Valkenborg D.

Anal Chem. 2019 Aug 6;91(15):10310-10319. doi: 10.1021/acs.analchem.9b02682. Epub 2019 Jul 23.

PMID:
31283196
9.

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.

Meehan CJ, Goig GA, Kohl TA, Verboven L, Dippenaar A, Ezewudo M, Farhat MR, Guthrie JL, Laukens K, Miotto P, Ofori-Anyinam B, Dreyer V, Supply P, Suresh A, Utpatel C, van Soolingen D, Zhou Y, Ashton PM, Brites D, Cabibbe AM, de Jong BC, de Vos M, Menardo F, Gagneux S, Gao Q, Heupink TH, Liu Q, Loiseau C, Rigouts L, Rodwell TC, Tagliani E, Walker TM, Warren RM, Zhao Y, Zignol M, Schito M, Gardy J, Cirillo DM, Niemann S, Comas I, Van Rie A.

Nat Rev Microbiol. 2019 Sep;17(9):533-545. doi: 10.1038/s41579-019-0214-5. Review.

PMID:
31209399
10.

The use of plasma donor-derived, cell-free DNA to monitor acute rejection after kidney transplantation.

Gielis EM, Ledeganck KJ, Dendooven A, Meysman P, Beirnaert C, Laukens K, De Schrijver J, Van Laecke S, Van Biesen W, Emonds MP, De Winter BY, Bosmans JL, Del Favero J, Abramowicz D.

Nephrol Dial Transplant. 2019 May 18. pii: gfz091. doi: 10.1093/ndt/gfz091. [Epub ahead of print]

PMID:
31106364
11.

QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments.

Van Houtven J, Agten A, Boonen K, Baggerman G, Hooyberghs J, Laukens K, Valkenborg D.

J Proteome Res. 2019 May 3;18(5):2221-2227. doi: 10.1021/acs.jproteome.9b00072. Epub 2019 Apr 11.

PMID:
30942071
12.

Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis.

Beirnaert C, Peeters L, Meysman P, Bittremieux W, Foubert K, Custers D, Van der Auwera A, Cuykx M, Pieters L, Covaci A, Laukens K.

Metabolites. 2019 Mar 20;9(3). pii: E54. doi: 10.3390/metabo9030054.

13.

Revelation of the metabolic pathway of hederacoside C using an innovative data analysis strategy for dynamic multiclass biotransformation experiments.

Peeters L, Beirnaert C, Van der Auwera A, Bijttebier S, De Bruyne T, Laukens K, Pieters L, Hermans N, Foubert K.

J Chromatogr A. 2019 Jun 21;1595:240-247. doi: 10.1016/j.chroma.2019.02.055. Epub 2019 Feb 25.

PMID:
30833026
14.

Plasma donor-derived cell-free DNA kinetics after kidney transplantation using a single tube multiplex PCR assay.

Gielis EM, Beirnaert C, Dendooven A, Meysman P, Laukens K, De Schrijver J, Van Laecke S, Van Biesen W, Emonds MP, De Winter BY, Bosmans JL, Del Favero J, Abramowicz D, Ledeganck KJ.

PLoS One. 2018 Dec 6;13(12):e0208207. doi: 10.1371/journal.pone.0208207. eCollection 2018.

15.

Proteomic analysis of posterior capsular plaques in congenital unilateral cataract.

Van Looveren J, Van Gerwen V, Schildermans K, Laukens K, Baggerman G, Tassignon MJ.

Acta Ophthalmol. 2018 Dec;96(8):e963-e969. doi: 10.1111/aos.13782. Epub 2018 Oct 3.

16.

On the viability of unsupervised T-cell receptor sequence clustering for epitope preference.

Meysman P, De Neuter N, Gielis S, Bui Thi D, Ogunjimi B, Laukens K.

Bioinformatics. 2019 May 1;35(9):1461-1468. doi: 10.1093/bioinformatics/bty821.

PMID:
30247624
17.

Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders.

Bartholomeus E, De Neuter N, Meysman P, Suls A, Keersmaekers N, Elias G, Jansens H, Hens N, Smits E, Van Tendeloo V, Beutels P, Van Damme P, Ogunjimi B, Laukens K, Mortier G.

Vaccine. 2018 Oct 8;36(42):6282-6289. doi: 10.1016/j.vaccine.2018.09.001. Epub 2018 Sep 8.

PMID:
30205979
18.

Grasping frequent subgraph mining for bioinformatics applications.

Mrzic A, Meysman P, Bittremieux W, Moris P, Cule B, Goethals B, Laukens K.

BioData Min. 2018 Sep 3;11:20. doi: 10.1186/s13040-018-0181-9. eCollection 2018. Review.

19.

Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing.

Bittremieux W, Meysman P, Noble WS, Laukens K.

J Proteome Res. 2018 Oct 5;17(10):3463-3474. doi: 10.1021/acs.jproteome.8b00359. Epub 2018 Sep 13.

20.

In vitro assessment of hepatotoxicity by metabolomics: a review.

Cuykx M, Rodrigues RM, Laukens K, Vanhaecke T, Covaci A.

Arch Toxicol. 2018 Oct;92(10):3007-3029. doi: 10.1007/s00204-018-2286-9. Epub 2018 Aug 25. Review.

PMID:
30155722

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