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The Culture Environment Influences Both Gene Regulation and Phenotypic Heterogeneity in Escherichia coli.

Smith A, Kaczmar A, Bamford RA, Smith C, Frustaci S, Kovacs-Simon A, O'Neill P, Moore K, Paszkiewicz K, Titball RW, Pagliara S.

Front Microbiol. 2018 Aug 15;9:1739. doi: 10.3389/fmicb.2018.01739. eCollection 2018.


Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.

Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA.

Open Biol. 2018 Jan;8(1). pii: 170184. doi: 10.1098/rsob.170184.


Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis.

Pass DA, Sornay E, Marchbank A, Crawford MR, Paszkiewicz K, Kent NA, Murray JAH.

PLoS Genet. 2017 Sep 13;13(9):e1006988. doi: 10.1371/journal.pgen.1006988. eCollection 2017 Sep.


Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality.

Dunthorn M, Zufall RA, Chi J, Paszkiewicz K, Moore K, Mahé F.

Genome Biol Evol. 2017 Jun 1;9(6):1781-1787. doi: 10.1093/gbe/evx125.


Molecular epidemiology of Pseudomonas aeruginosa in an unsegregated bronchiectasis cohort sharing hospital facilities with a cystic fibrosis cohort.

Mitchelmore PJ, Randall J, Bull MJ, Moore KA, O'Neill PA, Paszkiewicz K, Mahenthiralingam E, Scotton CJ, Sheldon CD, Withers NJ, Brown AR.

Thorax. 2017 Aug 26. pii: thoraxjnl-2016-209889. doi: 10.1136/thoraxjnl-2016-209889. [Epub ahead of print]


Decay of the glycolytic pathway and adaptation to intranuclear parasitism within Enterocytozoonidae microsporidia.

Wiredu Boakye D, Jaroenlak P, Prachumwat A, Williams TA, Bateman KS, Itsathitphaisarn O, Sritunyalucksana K, Paszkiewicz KH, Moore KA, Stentiford GD, Williams BAP.

Environ Microbiol. 2017 May;19(5):2077-2089. doi: 10.1111/1462-2920.13734. Epub 2017 Apr 12.


A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater.

Flaviani F, Schroeder DC, Balestreri C, Schroeder JL, Moore K, Paszkiewicz K, Pfaff MC, Rybicki EP.

Viruses. 2017 Mar 17;9(3). pii: E47. doi: 10.3390/v9030047.


A Noise Trimming and Positional Significance of Transposon Insertion System to Identify Essential Genes in Yersinia pestis.

Yang ZR, Bullifent HL, Moore K, Paszkiewicz K, Saint RJ, Southern SJ, Champion OL, Senior NJ, Sarkar-Tyson M, Oyston PC, Atkins TP, Titball RW.

Sci Rep. 2017 Feb 6;7:41923. doi: 10.1038/srep41923.


Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorum in soil.

Shaw S, Le Cocq K, Paszkiewicz K, Moore K, Winsbury R, de Torres Zabala M, Studholme DJ, Salmon D, Thornton CR, Grant MR.

Mol Plant Pathol. 2016 Dec;17(9):1425-1441. doi: 10.1111/mpp.12429. Epub 2016 Jul 24.


Pitfalls of haplotype phasing from amplicon-based long-read sequencing.

Laver TW, Caswell RC, Moore KA, Poschmann J, Johnson MB, Owens MM, Ellard S, Paszkiewicz KH, Weedon MN.

Sci Rep. 2016 Feb 17;6:21746. doi: 10.1038/srep21746.


Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation.

Gal C, Murton HE, Subramanian L, Whale AJ, Moore KM, Paszkiewicz K, Codlin S, Bähler J, Creamer KM, Partridge JF, Allshire RC, Kent NA, Whitehall SK.

EMBO Rep. 2016 Jan;17(1):79-93. doi: 10.15252/embr.201540476. Epub 2015 Nov 18.


Increase in bacteraemia cases in the East Midlands region of the UK due to MDR Escherichia coli ST73: high levels of genomic and plasmid diversity in causative isolates.

Alhashash F, Wang X, Paszkiewicz K, Diggle M, Zong Z, McNally A.

J Antimicrob Chemother. 2016 Feb;71(2):339-43. doi: 10.1093/jac/dkv365. Epub 2015 Oct 30.


The molecular characterisation of Escherichia coli K1 isolated from neonatal nasogastric feeding tubes.

Alkeskas A, Ogrodzki P, Saad M, Masood N, Rhoma NR, Moore K, Farbos A, Paszkiewicz K, Forsythe S.

BMC Infect Dis. 2015 Oct 26;15:449. doi: 10.1186/s12879-015-1210-7.


Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni.

Baig A, McNally A, Dunn S, Paszkiewicz KH, Corander J, Manning G.

BMC Genomics. 2015 Oct 24;16:852. doi: 10.1186/s12864-015-2087-y.


Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit.

Masood N, Moore K, Farbos A, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

BMC Genomics. 2015 Oct 5;16:750. doi: 10.1186/s12864-015-1961-y.


Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis.

Jameson E, Fu T, Brown IR, Paszkiewicz K, Purdy KJ, Frank S, Chen Y.

Environ Microbiol. 2016 Sep;18(9):2886-98. doi: 10.1111/1462-2920.13059. Epub 2015 Nov 3.


A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis.

Price SJ, Garner TW, Balloux F, Ruis C, Paszkiewicz KH, Moore K, Griffiths AG.

PLoS One. 2015 Jun 25;10(6):e0130500. doi: 10.1371/journal.pone.0130500. eCollection 2015.


The cost of phage resistance in a plant pathogenic bacterium is context-dependent.

Meaden S, Paszkiewicz K, Koskella B.

Evolution. 2015 May;69(5):1321-8. doi: 10.1111/evo.12652. Epub 2015 Apr 27.


Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex.

Morley L, McNally A, Paszkiewicz K, Corander J, Méric G, Sheppard SK, Blom J, Manning G.

Appl Environ Microbiol. 2015 Jun;81(11):3641-7. doi: 10.1128/AEM.00546-15. Epub 2015 Mar 20.


The impact of the HIRA histone chaperone upon global nucleosome architecture.

Gal C, Moore KM, Paszkiewicz K, Kent NA, Whitehall SK.

Cell Cycle. 2015;14(1):123-34. doi: 10.4161/15384101.2014.967123.

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