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Items: 1 to 20 of 39

1.

Interspecific Gene Flow Shaped the Evolution of the Genus Canis.

Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, de Manuel Montero M, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, Fernandes C, Gaubert P, Koepfli KP, Budd J, Rueness EK, Sillero C, Heide-Jørgensen MP, Petersen B, Sicheritz-Ponten T, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

Curr Biol. 2019 Dec 2;29(23):4152. doi: 10.1016/j.cub.2019.11.009. No abstract available.

2.

Characteristics of the complete mitochondrial genome of the monotypic genus Arctictis (Family: Viverridae) and its phylogenetic implications.

Mitra S, Kunteepuram V, Koepfli KP, Mehra N, Tabasum W, Sreenivas A, Gaur A.

PeerJ. 2019 Nov 25;7:e8033. doi: 10.7717/peerj.8033. eCollection 2019.

3.

Breeding Centers, Private Ranches, and Genomics for Creating Sustainable Wildlife Populations.

Wildt D, Miller P, Koepfli KP, Pukazhenthi B, Palfrey K, Livingston G, Beetem D, Shurter S, Gregory J, Takács M, Snodgrass K.

Bioscience. 2019 Nov 1;69(11):928-943. doi: 10.1093/biosci/biz091. Epub 2019 Oct 9.

4.

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter.

Beichman AC, Koepfli KP, Li G, Murphy W, Dobrynin P, Kliver S, Tinker MT, Murray MJ, Johnson J, Lindblad-Toh K, Karlsson EK, Lohmueller KE, Wayne RK.

Mol Biol Evol. 2019 Dec 1;36(12):2631-2655. doi: 10.1093/molbev/msz101.

PMID:
31212313
5.

Comparative genomics provides new insights into the remarkable adaptations of the African wild dog (Lycaon pictus).

Chavez DE, Gronau I, Hains T, Kliver S, Koepfli KP, Wayne RK.

Sci Rep. 2019 Jun 6;9(1):8329. doi: 10.1038/s41598-019-44772-5.

6.

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.

Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS.

G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084.

7.

Genome-wide sequence analyses of ethnic populations across Russia.

Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ.

Genomics. 2020 Jan;112(1):442-458. doi: 10.1016/j.ygeno.2019.03.007. Epub 2019 Mar 19.

PMID:
30902755
8.

Population Genomic Analysis of North American Eastern Wolves (Canis lycaon) Supports Their Conservation Priority Status.

Heppenheimer E, Harrigan RJ, Rutledge LY, Koepfli KP, DeCandia AL, Brzeski KE, Benson JF, Wheeldon T, Patterson BR, Kays R, Hohenlohe PA, von Holdt BM.

Genes (Basel). 2018 Dec 4;9(12). pii: E606. doi: 10.3390/genes9120606.

9.

Phylogeographic and diversification patterns of the white-nosed coati (Nasua narica): Evidence for south-to-north colonization of North America.

Nigenda-Morales SF, Gompper ME, Valenzuela-Galván D, Lay AR, Kapheim KM, Hass C, Booth-Binczik SD, Binczik GA, Hirsch BT, McColgin M, Koprowski JL, McFadden K, Wayne RK, Koepfli KP.

Mol Phylogenet Evol. 2019 Feb;131:149-163. doi: 10.1016/j.ympev.2018.11.011. Epub 2018 Nov 20.

PMID:
30468940
10.

Interspecific Gene Flow Shaped the Evolution of the Genus Canis.

Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, Fernandes C, Gaubert P, Koepfli KP, Budd J, Rueness EK, Sillero C, Heide-Jørgensen MP, Petersen B, Sicheritz-Ponten T, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

Curr Biol. 2018 Nov 5;28(21):3441-3449.e5. doi: 10.1016/j.cub.2018.08.041. Epub 2018 Oct 18. Erratum in: Curr Biol. 2019 Dec 2;29(23):4152.

11.

Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1514. doi: 10.1038/s41559-018-0664-6.

PMID:
30104754
12.

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1479-1491. doi: 10.1038/s41559-018-0611-6. Epub 2018 Aug 6. Erratum in: Nat Ecol Evol. 2018 Aug 13;:.

13.

Improving draft genome contiguity with reference-derived in silico mate-pair libraries.

Grau JH, Hackl T, Koepfli KP, Hofreiter M.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy029.

14.

Robust forensic matching of confiscated horns to individual poached African rhinoceros.

Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, Kariuki L, du Toit R, Anderson N, Okori J, Antonik A, Koepfli KP, Thompson P, O'Brien SJ.

Curr Biol. 2018 Jan 8;28(1):R13-R14. doi: 10.1016/j.cub.2017.11.005.

15.

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin.

Mohamed Yusoff A, Tan TK, Hari R, Koepfli KP, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW.

Sci Rep. 2016 Sep 13;6:28199. doi: 10.1038/srep28199.

16.

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences.

Tamazian G, Dobrynin P, Krasheninnikova K, Komissarov A, Koepfli KP, O'Brien SJ.

Gigascience. 2016 Aug 22;5(1):38. doi: 10.1186/s13742-016-0141-6.

17.

Pangolin genomes and the evolution of mammalian scales and immunity.

Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ.

Genome Res. 2016 Oct;26(10):1312-1322. Epub 2016 Aug 10.

18.

Response to Comment by Faurby, Werdelin and Svenning.

O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P.

Genome Biol. 2016 May 5;17:90. doi: 10.1186/s13059-016-0942-z. No abstract available.

19.

Genomic legacy of the African cheetah, Acinonyx jubatus.

Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ.

Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4.

20.

The Population Origins and Expansion of Feral Cats in Australia.

Spencer PB, Yurchenko AA, David VA, Scott R, Koepfli KP, Driscoll C, O'Brien SJ, Menotti-Raymond M.

J Hered. 2016 Mar;107(2):104-14. doi: 10.1093/jhered/esv095. Epub 2015 Dec 7.

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