Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 20 of 55

1.

LM-GlycomeAtlas Ver. 1.0: A Novel Visualization Tool for Lectin Microarray-Based Glycomic Profiles of Mouse Tissue Sections.

Nagai-Okatani C, Aoki-Kinoshita KF, Kakuda S, Nagai M, Hagiwara K, Kiyohara K, Fujita N, Suzuki Y, Sato T, Angata K, Kuno A.

Molecules. 2019 Aug 15;24(16). pii: E2962. doi: 10.3390/molecules24162962.

2.

Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.

Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x. Review.

PMID:
31332201
3.

GlycanFormatConverter: a conversion tool for translating the complexities of glycans.

Tsuchiya S, Yamada I, Aoki-Kinoshita KF.

Bioinformatics. 2019 Jul 15;35(14):2434-2440. doi: 10.1093/bioinformatics/bty990.

4.

Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns.

Yamakawa N, Vanbeselaere J, Chang LY, Yu SY, Ducrocq L, Harduin-Lepers A, Kurata J, Aoki-Kinoshita KF, Sato C, Khoo KH, Kitajima K, Guerardel Y.

Nat Commun. 2018 Nov 7;9(1):4647. doi: 10.1038/s41467-018-06950-3.

5.

Analyzing Glycan-Binding Profiles Using Weighted Multiple Alignment of Trees.

Aoki-Kinoshita KF.

Methods Mol Biol. 2018;1807:131-140. doi: 10.1007/978-1-4939-8561-6_10.

PMID:
30030808
6.

MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns.

Hosoda M, Takahashi Y, Shiota M, Shinmachi D, Inomoto R, Higashimoto S, Aoki-Kinoshita KF.

Carbohydr Res. 2018 Jul 15;464:44-56. doi: 10.1016/j.carres.2018.05.003. Epub 2018 May 11.

7.

GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.

8.

Glycoinformatics.

Campbell MP, Aoki-Kinoshita KF, Lisacek F, York WS, Packer NH.

In: Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Darvill AG, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH, editors. Essentials of Glycobiology [Internet]. 3rd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 2015-2017. Chapter 52.
2017.

9.

Implementation of GlycanBuilder to draw a wide variety of ambiguous glycans.

Tsuchiya S, Aoki NP, Shinmachi D, Matsubara M, Yamada I, Aoki-Kinoshita KF, Narimatsu H.

Carbohydr Res. 2017 Jun 5;445:104-116. doi: 10.1016/j.carres.2017.04.015. Epub 2017 Apr 19.

10.

WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures.

Matsubara M, Aoki-Kinoshita KF, Aoki NP, Yamada I, Narimatsu H.

J Chem Inf Model. 2017 Apr 24;57(4):632-637. doi: 10.1021/acs.jcim.6b00650. Epub 2017 Mar 22.

11.

Development and application of an algorithm to compute weighted multiple glycan alignments.

Hosoda M, Akune Y, Aoki-Kinoshita KF.

Bioinformatics. 2017 May 1;33(9):1317-1323. doi: 10.1093/bioinformatics/btw827.

12.

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data.

Liu Y, McBride R, Stoll M, Palma AS, Silva L, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Novotny MV, Packer NH, Ranzinger R, Rapp E, Rudd PM, Struwe WB, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C, Paulson JC, Feizi T, Smith DF.

Glycobiology. 2016 Nov 22. [Epub ahead of print]

13.

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Struwe WB, Agravat S, Aoki-Kinoshita KF, Campbell MP, Costello CE, Dell A, Ten Feizi, Haslam SM, Karlsson NG, Khoo KH, Kolarich D, Liu Y, McBride R, Novotny MV, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Tiemeyer M, Wells L, York WS, Zaia J, Kettner C.

Glycobiology. 2016 Sep;26(9):907-910. Epub 2016 Sep 21.

14.

A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks.

Hou W, Qiu Y, Hashimoto N, Ching WK, Aoki-Kinoshita KF.

BMC Bioinformatics. 2016 Jul 25;17 Suppl 7:240. doi: 10.1186/s12859-016-1094-6.

15.

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.

Akune Y, Lin CH, Abrahams JL, Zhang J, Packer NH, Aoki-Kinoshita KF, Campbell MP.

Carbohydr Res. 2016 Aug 5;431:56-63. doi: 10.1016/j.carres.2016.05.012. Epub 2016 May 30.

PMID:
27318307
16.

The Glycome Analytics Platform: an integrative framework for glycobioinformatics.

Barnett CB, Aoki-Kinoshita KF, Naidoo KJ.

Bioinformatics. 2016 Oct 1;32(19):3005-11. doi: 10.1093/bioinformatics/btw341. Epub 2016 Jun 10.

PMID:
27288496
17.

Symbol Nomenclature for Graphical Representations of Glycans.

Varki A, Cummings RD, Aebi M, Packer NH, Seeberger PH, Esko JD, Stanley P, Hart G, Darvill A, Kinoshita T, Prestegard JJ, Schnaar RL, Freeze HH, Marth JD, Bertozzi CR, Etzler ME, Frank M, Vliegenthart JF, L├╝tteke T, Perez S, Bolton E, Rudd P, Paulson J, Kanehisa M, Toukach P, Aoki-Kinoshita KF, Dell A, Narimatsu H, York W, Taniguchi N, Kornfeld S.

Glycobiology. 2015 Dec;25(12):1323-4. doi: 10.1093/glycob/cwv091. No abstract available.

18.

Implementation of linked data in the life sciences at BioHackathon 2011.

Aoki-Kinoshita KF, Kinjo AR, Morita M, Igarashi Y, Chen YA, Shigemoto Y, Fujisawa T, Akune Y, Katoda T, Kokubu A, Mori T, Nakao M, Kawashima S, Okamoto S, Katayama T, Ogishima S.

J Biomed Semantics. 2015 Jan 7;6:3. doi: 10.1186/2041-1480-6-3. eCollection 2015. Review.

19.

Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.

Yamamoto-Hino M, Yoshida H, Ichimiya T, Sakamura S, Maeda M, Kimura Y, Sasaki N, Aoki-Kinoshita KF, Kinoshita-Toyoda A, Toyoda H, Ueda R, Nishihara S, Goto S.

Genes Cells. 2015 Jun;20(6):521-42. doi: 10.1111/gtc.12246. Epub 2015 May 4.

20.

Analyzing glycan-binding patterns with the ProfilePSTMM Tool.

Aoki-Kinoshita KF.

Methods Mol Biol. 2015;1273:193-202. doi: 10.1007/978-1-4939-2343-4_14.

PMID:
25753712

Supplemental Content

Loading ...
Support Center