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Items: 1 to 20 of 61

1.

Using RNA-seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.

Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN.

G3 (Bethesda). 2017 May 25. pii: g3.117.043000. doi: 10.1534/g3.117.043000. [Epub ahead of print]

2.

The Divergence of Flowering Time Modulated by FT/TFL1 Is Independent to Their Interaction and Binding Activities.

Wang Z, Yang R, Devisetty UK, Maloof JN, Zuo Y, Li J, Shen Y, Zhao J, Bao M, Ning G.

Front Plant Sci. 2017 May 8;8:697. doi: 10.3389/fpls.2017.00697. eCollection 2017.

3.

The Generation of Doubled Haploid Lines for QTL Mapping.

Filiault DL, Seymour DK, Maruthachalam R, Maloof JN.

Methods Mol Biol. 2017;1610:39-57. doi: 10.1007/978-1-4939-7003-2_4.

PMID:
28439856
4.

YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.

Müller-Moulé P, Nozue K, Pytlak ML, Palmer CM, Covington MF, Wallace AD, Harmer SL, Maloof JN.

PeerJ. 2016 Oct 13;4:e2574. eCollection 2016.

5.

Tomato phyE Is Required for Shade Avoidance in the Absence of phyB1 and phyB2.

Schrager-Lavelle A, Herrera LA, Maloof JN.

Front Plant Sci. 2016 Sep 16;7:1275. eCollection 2016.

6.

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.

7.

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.

8.

Molecular control of crop shade avoidance.

Carriedo LG, Maloof JN, Brady SM.

Curr Opin Plant Biol. 2016 Apr;30:151-8. doi: 10.1016/j.pbi.2016.03.005. Epub 2016 Mar 24. Review.

PMID:
27016665
9.

Genetic architecture, biochemical underpinnings and ecological impact of floral UV patterning.

Brock MT, Lucas LK, Anderson NA, Rubin MJ, Markelz RJ, Covington MF, Devisetty UK, Chapple C, Maloof JN, Weinig C.

Mol Ecol. 2016 Mar;25(5):1122-40. doi: 10.1111/mec.13542. Epub 2016 Feb 23.

PMID:
26800256
10.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.

PMID:
26569124
11.

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.

12.

Structured Light-Based 3D Reconstruction System for Plants.

Nguyen TT, Slaughter DC, Max N, Maloof JN, Sinha N.

Sensors (Basel). 2015 Jul 29;15(8):18587-612. doi: 10.3390/s150818587.

13.

Reassess the t Test: Interact with All Your Data via ANOVA.

Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ.

Plant Cell. 2015 Aug;27(8):2088-94. doi: 10.1105/tpc.15.00238. Epub 2015 Jul 28.

14.

Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.

Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN.

PLoS Genet. 2015 Apr 15;11(4):e1004953. doi: 10.1371/journal.pgen.1004953. eCollection 2015 Apr.

15.

Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2014 Sep;26(9):3616-29. doi: 10.1105/tpc.114.130112. Epub 2014 Sep 30.

16.

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.

Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN.

G3 (Bethesda). 2014 Aug 12;4(11):2065-78. doi: 10.1534/g3.114.012526.

17.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
18.

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2616-21. doi: 10.1073/pnas.1402835111. Epub 2014 Jun 9.

19.

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating.

Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ.

Plant Physiol. 2014 May;165(1):175-85. doi: 10.1104/pp.113.233213. Epub 2014 Mar 12.

20.

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape.

Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, Prins B, Li L, Myles S, Sinha NR.

Plant Physiol. 2014 Jan;164(1):259-72. doi: 10.1104/pp.113.229708. Epub 2013 Nov 27.

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