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Items: 1 to 20 of 42

1.

Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.

Hadadi N, Pandey V, Chiappino-Pepe A, Morales M, Gallart-Ayala H, Mehl F, Ivanisevic J, Sentchilo V, Meer JRV.

NPJ Syst Biol Appl. 2020 Jan 7;6(1):1. doi: 10.1038/s41540-019-0121-4.

2.

Author Correction: Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.

Hadadi N, Pandey V, Chiappino-Pepe A, Morales M, Gallart-Ayala H, Mehl F, Ivanisevic J, Sentchilo V, van der Meer JR.

NPJ Syst Biol Appl. 2020 Jan 30;6(1):4. doi: 10.1038/s41540-020-0123-2.

3.

Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.

Hadadi N, Pandey V, Chiappino-Pepe A, Morales M, Gallart-Ayala H, Mehl F, Ivanisevic J, Sentchilo V, Meer JRV.

NPJ Syst Biol Appl. 2020 Jan 7;6:1. doi: 10.1038/s41540-019-0121-4. eCollection 2020. Erratum in: NPJ Syst Biol Appl. 2020 Jan 30;6(1):4.

4.

From Samples to Insights into Metabolism: Uncovering Biologically Relevant Information in LC-HRMS Metabolomics Data.

Ivanisevic J, Want EJ.

Metabolites. 2019 Dec 17;9(12). pii: E308. doi: 10.3390/metabo9120308. Review.

5.

Systemic and central nervous system metabolic alterations in Alzheimer's disease.

van der Velpen V, Teav T, Gallart-Ayala H, Mehl F, Konz I, Clark C, Oikonomidi A, Peyratout G, Henry H, Delorenzi M, Ivanisevic J, Popp J.

Alzheimers Res Ther. 2019 Nov 28;11(1):93. doi: 10.1186/s13195-019-0551-7.

6.

Merged Targeted Quantification and Untargeted Profiling for Comprehensive Assessment of Acylcarnitine and Amino Acid Metabolism.

Teav T, Gallart-Ayala H, van der Velpen V, Mehl F, Henry H, Ivanisevic J.

Anal Chem. 2019 Sep 17;91(18):11757-11769. doi: 10.1021/acs.analchem.9b02373. Epub 2019 Aug 26.

PMID:
31407894
7.

Molecular Profiling and Functional Analysis of Macrophage-Derived Tumor Extracellular Vesicles.

Cianciaruso C, Beltraminelli T, Duval F, Nassiri S, Hamelin R, Mozes A, Gallart-Ayala H, Ceada Torres G, Torchia B, Ries CH, Ivanisevic J, De Palma M.

Cell Rep. 2019 Jun 4;27(10):3062-3080.e11. doi: 10.1016/j.celrep.2019.05.008.

8.

Identification of bioactive metabolites using activity metabolomics.

Rinschen MM, Ivanisevic J, Giera M, Siuzdak G.

Nat Rev Mol Cell Biol. 2019 Jun;20(6):353-367. doi: 10.1038/s41580-019-0108-4. Review.

9.

Ammonium accumulation and chemokine decrease in culture media of Gcdh-/- 3D reaggregated brain cell cultures.

Cudré-Cung HP, Remacle N, do Vale-Pereira S, Gonzalez M, Henry H, Ivanisevic J, Schmiesing J, Mühlhausen C, Braissant O, Ballhausen D.

Mol Genet Metab. 2019 Apr;126(4):416-428. doi: 10.1016/j.ymgme.2019.01.009. Epub 2019 Jan 18.

PMID:
30686684
10.

LC-HRMS data as a result of untargeted metabolomic profiling of human cerebrospinal fluid.

Mehl F, Gallart-Ayala H, Konz I, Teav T, Oikonomidi A, Peyratout G, van der Velpen V, Popp J, Ivanisevic J.

Data Brief. 2018 Oct 27;21:1358-1362. doi: 10.1016/j.dib.2018.10.113. eCollection 2018 Dec.

11.

De novo NAD+ synthesis enhances mitochondrial function and improves health.

Katsyuba E, Mottis A, Zietak M, De Franco F, van der Velpen V, Gariani K, Ryu D, Cialabrini L, Matilainen O, Liscio P, Giacchè N, Stokar-Regenscheit N, Legouis D, de Seigneux S, Ivanisevic J, Raffaelli N, Schoonjans K, Pellicciari R, Auwerx J.

Nature. 2018 Nov;563(7731):354-359. doi: 10.1038/s41586-018-0645-6. Epub 2018 Oct 24.

12.

A global HILIC-MS approach to measure polar human cerebrospinal fluid metabolome: Exploring gender-associated variation in a cohort of elderly cognitively healthy subjects.

Gallart-Ayala H, Konz I, Mehl F, Teav T, Oikonomidi A, Peyratout G, van der Velpen V, Popp J, Ivanisevic J.

Anal Chim Acta. 2018 Dec 11;1037:327-337. doi: 10.1016/j.aca.2018.04.002. Epub 2018 Apr 19.

PMID:
30292309
13.

XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules.

Domingo-Almenara X, Montenegro-Burke JR, Ivanisevic J, Thomas A, Sidibé J, Teav T, Guijas C, Aisporna AE, Rinehart D, Hoang L, Nordström A, Gómez-Romero M, Whiley L, Lewis MR, Nicholson JK, Benton HP, Siuzdak G.

Nat Methods. 2018 Sep;15(9):681-684. doi: 10.1038/s41592-018-0110-3. Epub 2018 Aug 27.

14.

Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology.

Huan T, Palermo A, Ivanisevic J, Rinehart D, Edler D, Phommavongsay T, Benton HP, Guijas C, Domingo-Almenara X, Warth B, Siuzdak G.

Anal Chem. 2018 Jul 17;90(14):8396-8403. doi: 10.1021/acs.analchem.8b00875. Epub 2018 Jun 28.

PMID:
29893550
15.

Metabolomics as a Tool to Understand Pathophysiological Processes.

Ivanisevic J, Thomas A.

Methods Mol Biol. 2018;1730:3-28. doi: 10.1007/978-1-4939-7592-1_1.

PMID:
29363062
16.

α-ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming.

Liu PS, Wang H, Li X, Chao T, Teav T, Christen S, Di Conza G, Cheng WC, Chou CH, Vavakova M, Muret C, Debackere K, Mazzone M, Huang HD, Fendt SM, Ivanisevic J, Ho PC.

Nat Immunol. 2017 Sep;18(9):985-994. doi: 10.1038/ni.3796. Epub 2017 Jul 17.

PMID:
28714978
17.

Systems biology guided by XCMS Online metabolomics.

Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Ideker T, Majumder EL, Wall JD, Rattray NJW, Goodacre R, Lairson LL, Siuzdak G.

Nat Methods. 2017 Apr 27;14(5):461-462. doi: 10.1038/nmeth.4260. No abstract available.

18.

Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes.

Montenegro-Burke JR, Aisporna AE, Benton HP, Rinehart D, Fang M, Huan T, Warth B, Forsberg E, Abe BT, Ivanisevic J, Wolan DW, Teyton L, Lairson L, Siuzdak G.

Anal Chem. 2017 Jan 17;89(2):1254-1259. doi: 10.1021/acs.analchem.6b03890. Epub 2017 Jan 3.

19.

Ammonium accumulation is a primary effect of 2-methylcitrate exposure in an in vitro model for brain damage in methylmalonic aciduria.

Cudré-Cung HP, Zavadakova P, do Vale-Pereira S, Remacle N, Henry H, Ivanisevic J, Tavel D, Braissant O, Ballhausen D.

Mol Genet Metab. 2016 Sep;119(1-2):57-67. doi: 10.1016/j.ymgme.2016.07.013. Epub 2016 Jul 30.

20.

Metabolic drift in the aging brain.

Ivanisevic J, Stauch KL, Petrascheck M, Benton HP, Epstein AA, Fang M, Gorantla S, Tran M, Hoang L, Kurczy ME, Boska MD, Gendelman HE, Fox HS, Siuzdak G.

Aging (Albany NY). 2016 May;8(5):1000-20. doi: 10.18632/aging.100961.

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