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Association of Flavonifractor plautii, a Flavonoid-Degrading Bacterium, with the Gut Microbiome of Colorectal Cancer Patients in India.

Gupta A, Dhakan DB, Maji A, Saxena R, P K VP, Mahajan S, Pulikkan J, Kurian J, Gomez AM, Scaria J, Amato KR, Sharma AK, Sharma VK.

mSystems. 2019 Nov 12;4(6). pii: e00438-19. doi: 10.1128/mSystems.00438-19.


Amish (Rural) vs. non-Amish (Urban) Infant Fecal Microbiotas Are Highly Diverse and Their Transplantation Lead to Differences in Mucosal Immune Maturation in a Humanized Germfree Piglet Model.

Dhakal S, Wang L, Antony L, Rank J, Bernardo P, Ghimire S, Bondra K, Siems C, Lakshmanappa YS, Renu S, Hogshead B, Krakowka S, Kauffman M, Scaria J, LeJeune JT, Yu Z, Renukaradhya GJ.

Front Immunol. 2019 Jul 16;10:1509. doi: 10.3389/fimmu.2019.01509. eCollection 2019.


Geography Shapes the Population Genomics of Salmonella enterica Dublin.

Fenske GJ, Thachil A, McDonough PL, Glaser A, Scaria J.

Genome Biol Evol. 2019 Aug 1;11(8):2220-2231. doi: 10.1093/gbe/evz158.


Editorial: Alternative Therapeutic Approaches For Multidrug Resistant Clostridium difficile.

Janvilisri T, Sorg JA, Scaria J, Sadowsky MJ.

Front Microbiol. 2019 May 31;10:1216. doi: 10.3389/fmicb.2019.01216. eCollection 2019. No abstract available.


Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada.

Ceric O, Tyson GH, Goodman LB, Mitchell PK, Zhang Y, Prarat M, Cui J, Peak L, Scaria J, Antony L, Thomas M, Nemser SM, Anderson R, Thachil AJ, Franklin-Guild RJ, Slavic D, Bommineni YR, Mohan S, Sanchez S, Wilkes R, Sahin O, Hendrix GK, Lubbers B, Reed D, Jenkins T, Roy A, Paulsen D, Mani R, Olsen K, Pace L, Pulido M, Jacob M, Webb BT, Dasgupta S, Patil A, Ramachandran A, Tewari D, Thirumalapura N, Kelly DJ, Rankin SC, Lawhon SD, Wu J, Burbick CR, Reimschuessel R.

BMC Vet Res. 2019 May 6;15(1):130. doi: 10.1186/s12917-019-1864-2.


Gut Microbial Dynamics during Conventionalization of Germfree Chicken.

Thomas M, Wongkuna S, Ghimire S, Kumar R, Antony L, Doerner KC, Singery A, Nelson E, Woyengo T, Chankhamhaengdecha S, Janvilisri T, Scaria J.

mSphere. 2019 Mar 27;4(2). pii: e00035-19. doi: 10.1128/mSphere.00035-19.


The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention.

Sankaranarayanan R, Valiveti CK, Kumar DR, Van Slambrouck S, Kesharwani SS, Seefeldt T, Scaria J, Tummala H, Bhat GJ.

Cancers (Basel). 2019 Mar 26;11(3). pii: E427. doi: 10.3390/cancers11030427.


Antimicrobial-Resistant Escherichia coli from Environmental Waters in Northern Colorado.

Haberecht HB, Nealon NJ, Gilliland JR, Holder AV, Runyan C, Oppel RC, Ibrahim HM, Mueller L, Schrupp F, Vilchez S, Antony L, Scaria J, Ryan EP.

J Environ Public Health. 2019 Feb 18;2019:3862949. doi: 10.1155/2019/3862949. eCollection 2019.


Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg.

Antony L, Behr M, Sockett D, Miskimins D, Aulik N, Christopher-Hennings J, Nelson E, Allard MW, Scaria J.

Gut Pathog. 2018 Dec 24;10:53. doi: 10.1186/s13099-018-0279-0. eCollection 2018.


Draft Genome Sequences of Salmonella enterica subsp. enterica Serotype Heidelberg from Chicken and Turkey Farm Environments.

Deblais L, Scaria J, Rajashekara G.

Microbiol Resour Announc. 2018 Nov 21;7(20). pii: e01204-18. doi: 10.1128/MRA.01204-18. eCollection 2018 Nov.


Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples.

Deblais L, Lorentz B, Scaria J, Nagaraja KV, Nisar M, Lauer D, Voss S, Rajashekara G.

Front Microbiol. 2018 Aug 10;9:1841. doi: 10.3389/fmicb.2018.01841. eCollection 2018.


Genotypic and Phenotypic Characterization of Salmonella Isolated from Fresh Ground Meats Obtained from Retail Grocery Stores in the Brookings, South Dakota, Area.

Erickson AK, Murray DL, Ruesch LA, Thomas M, Lau Z, Scaria J.

J Food Prot. 2018 Sep;81(9):1526-1534. doi: 10.4315/0362-028X.JFP-18-076.


Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife.

Thomas M, Fenske GJ, Antony L, Ghimire S, Welsh R, Ramachandran A, Scaria J.

Gut Pathog. 2017 Nov 21;9:66. doi: 10.1186/s13099-017-0213-x. eCollection 2017.


Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle.

Thomas M, Webb M, Ghimire S, Blair A, Olson K, Fenske GJ, Fonder AT, Christopher-Hennings J, Brake D, Scaria J.

Sci Rep. 2017 Sep 25;7(1):12257. doi: 10.1038/s41598-017-12481-6.


Genetic Relatedness Among Shiga Toxin-Producing Escherichia coli Isolated Along the Animal Food Supply Chain and in Gastroenteritis Cases in Qatar Using Multilocus Sequence Typing.

Palanisamy S, Chang Y, Scaria J, Penha Filho RAC, Peters KE, Doiphode SH, Sultan A, Mohammed HO.

Foodborne Pathog Dis. 2017 Jun;14(6):318-325. doi: 10.1089/fpd.2016.2209. Epub 2017 Mar 30.


Genome Sequences of Salmonella enterica subsp. enterica Serovar Lubbock Strains Isolated from Liver Abscesses of Feedlot Cattle.

Amachawadi RG, Thomas M, Nagaraja TG, Scaria J.

Genome Announc. 2016 May 5;4(3). pii: e00319-16. doi: 10.1128/genomeA.00319-16.


Draft Genome Sequences of 37 Salmonella enterica Strains Isolated from Poultry Sources in Nigeria.

Useh NM, Ngbede EO, Akange N, Thomas M, Foley A, Keena MC, Nelson E, Christopher-Hennings J, Tomita M, Suzuki H, Scaria J.

Genome Announc. 2016 May 5;4(3). pii: e00315-16. doi: 10.1128/genomeA.00315-16.


Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries.

Neiger R, Thomas M, Das S, Barnes M, Fletcher B, Snekvik K, Thompson J, Scaria J.

Genome Announc. 2016 Mar 10;4(2). pii: e00035-16. doi: 10.1128/genomeA.00035-16.


Distribution and factors associated with Salmonella enterica genotypes in a diverse population of humans and animals in Qatar using multi-locus sequence typing (MLST).

Chang YC, Scaria J, Ibraham M, Doiphode S, Chang YF, Sultan A, Mohammed HO.

J Infect Public Health. 2016 May-Jun;9(3):315-23. doi: 10.1016/j.jiph.2015.10.013. Epub 2015 Nov 27.


Complete Genome Sequence of a Highly Pathogenic Avian Influenza Virus (H5N2) Associated with an Outbreak in Commercial Chickens, Iowa, USA, 2015.

Clement T, Kutish GF, Nezworski J, Scaria J, Nelson E, Christopher-Hennings J, Diel DG.

Genome Announc. 2015 Jun 11;3(3). pii: e00613-15. doi: 10.1128/genomeA.00613-15.

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